A study of gene expression changes at the Bp-2 locus associated with bitter pit symptom expression in apple (Malus pumila)

The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)

(2017) Matteo Buti et al.   GigaScience

Fruit Calcium: Transport and Physiology

(2016) Bradleigh Hocking et al.   Frontiers in Plant Science

Electrical impedance of Shiraz berries correlates with decreasing cell vitality during ripening

(2015) L. Caravia et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Fruit calcium accumulation coupled and uncoupled from its transpiration in kiwifruit

(2015) Giuseppe Montanaro et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification and validation of a QTL influencing bitter pit symptoms in apple (Malus × domestica)

(2015) M. Buti et al.   MOLECULAR BREEDING

The Presence of Fucogalactoxyloglucan and Its Synthesis in Rice Indicates Conserved Functional Importance in Plants

(2015) Lifeng Liu et al.   PLANT PHYSIOLOGY

Fine-mapping of the apple scab resistance locus Rvi12 (Vb) derived from ‘Hansen’s baccata #2’

(2014) S. Padmarasu et al.   MOLECULAR BREEDING

Novel genomic approaches unravel genetic architecture of complex traits in apple

(2013) Satish Kumar et al.   BMC GENOMICS

Cell wall structures leading to cultivar differences in softening rates develop early during apple (Malus x domestica) fruit growth

(2013) Jovyn KT Ng et al.   BMC PLANT BIOLOGY

Comparison of Phenolic Composition of Healthy Apple Tissues and Tissues Affected by Bitter Pit

(2013) Anka Zupan et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Biochemistry and physiological roles of enzymes that ‘cut and paste’ plant cell-wall polysaccharides

(2013) Lenka Franková et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shading affects flesh calcium uptake and concentration, bitter pit incidence and other fruit traits in “Greensleeves” apple

(2013) Sergio T. de Freitas et al.   SCIENTIA HORTICULTURAE

Relationship between xylem functionality, calcium content and the incidence of bitter pit in apple fruit

(2013) Aquidauana Miqueloto et al.   SCIENTIA HORTICULTURAE

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple

(2012) David Chagné et al.   PLoS One

A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection

(2012) D. J. Sargent et al.   THEORETICAL AND APPLIED GENETICS

A genetic linkage map of an apple rootstock progeny anchored to the Malus genome sequence

(2012) F. Fernández-Fernández et al.   Tree Genetics & Genomes

The development and geometry of shape change in Arabidopsis thaliana cotyledon pavement cells

(2011) Chunhua Zhang et al.   BMC PLANT BIOLOGY

Calcium regulation of tip growth: new genes for old mechanisms

(2011) Kai R Konrad et al.   CURRENT OPINION IN PLANT BIOLOGY

Comprehensive QTL mapping survey dissects the complex fruit texture physiology in apple (Malus x domestica Borkh.).

(2011) Sara Longhi et al.   JOURNAL OF EXPERIMENTAL BOTANY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

A Mechanochemical Model Explains Interactions between Cortical Microtubules in Plants

(2010) Jun F. Allard et al.   BIOPHYSICAL JOURNAL

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Signaling Pathways Mediating the Induction of Apple Fruitlet Abscission

(2010) A. Botton et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Functional Characterization of Xyloglucan Glycosynthases from GH7, GH12, and GH16 Scaffolds

(2009) Fredrika Gullfot et al.   BIOMACROMOLECULES

Microanalysis of Plant Cell Wall Polysaccharides

(2009) Nicolai Obel et al.   Molecular Plant

Phylogenetic relationships among seed plants: Persistent questions and the limits of molecular data

(2008) Sarah Mathews   AMERICAN JOURNAL OF BOTANY

An Expanded Biological Repertoire for Ins(3,4,5,6)P4 through its Modulation of ClC-3 Function

(2008) Jennifer Mitchell et al.   CURRENT BIOLOGY

Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants*

(2008) Maria J Peña et al.   GLYCOBIOLOGY

Development of an STS map of an interspecific progeny of Malus

(2008) F. Fernández-Fernández et al.   Tree Genetics & Genomes