Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase,Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminalMyristoylationSites (SRMS)

Vimentin intermediate filaments control actin stress fiber assembly through GEF-H1 and RhoA

(2017) Yaming Jiu et al.   JOURNAL OF CELL SCIENCE

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer

(2017) Chiara Francavilla et al.   Cell Reports

Understanding the cellular roles of Fyn-related kinase (FRK): implications in cancer biology

(2016) Raghuveera Kumar Goel et al.   CANCER AND METASTASIS REVIEWS

Targeting BRK-Positive Breast Cancers with Small-Molecule Kinase Inhibitors

(2016) Jie Jiang et al.   CANCER RESEARCH

Dephosphorylation of MAP2D enhances its binding to vimentin in preovulatory ovarian granulosa cells

(2016) Maxfield P. Flynn et al.   JOURNAL OF CELL SCIENCE

Leukaemogenic effects of Ptpn11 activating mutations in the stem cell microenvironment

(2016) Lei Dong et al.   NATURE

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

(2016) Stefka Tyanova et al.   Nature Protocols

Building nuclear bodies with RNA

(2016) Katharine H. Wrighton   NATURE REVIEWS MOLECULAR CELL BIOLOGY

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

(2016) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68

(2016) Mikael Feracci et al.   Nature Communications

Improved intra-array and interarray normalization of peptide microarray phosphorylation for phosphorylome and kinome profiling by rational selection of relevant spots

(2016) Jetse Scholma et al.   Scientific Reports

Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics

(2016) Zachary C. Poss et al.   Cell Reports

Tracing the footprints of the breast cancer oncogene BRK — Past till present

(2015) Raghuveera Kumar Goel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER

Protein-tyrosine Phosphatase and Kinase Specificity in Regulation of SRC and Breast Tumor Kinase

(2015) Gaofeng Fan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Multidimensional proteomics for cell biology

(2015) Mark Larance et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Induction of tissue- and stressor-specific kinomic responses in chickens exposed to hot and cold stresses

(2015) Scott Napper et al.   POULTRY SCIENCE

Global Analysis of Human Nonreceptor Tyrosine Kinase Specificity Using High-Density Peptide Microarrays

(2014) Yang Deng et al.   JOURNAL OF PROTEOME RESEARCH

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

(2014) Peter V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

(2014) Kirti Sharma et al.   Cell Reports

High expression level and nuclear localization of Sam68 are associated with progression and poor prognosis in colorectal cancer

(2013) Wen-Ting Liao et al.   BMC GASTROENTEROLOGY

EGFR-Mediated Beclin 1 Phosphorylation in Autophagy Suppression, Tumor Progression, and Tumor Chemoresistance

(2013) Yongjie Wei et al.   CELL

The unique N-terminal region of SRMS regulates enzymatic activity and phosphorylation of its novel substrate docking protein 1

(2013) Raghuveera K. Goel et al.   FEBS Journal

Role of Sam68 in Post-Transcriptional Gene Regulation

(2013) Flora Sánchez-Jiménez et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification of Direct Tyrosine Kinase Substrates Based on Protein Kinase Assay-Linked Phosphoproteomics

(2013) Liang Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

The Coming of Age of Phosphoproteomics—from Large Data Sets to Inference of Protein Functions

(2013) Philippe P. Roux et al.   MOLECULAR & CELLULAR PROTEOMICS

Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions

(2013) M. Courcelles et al.   Molecular Systems Biology

Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways

(2013) Mark L. Grimes et al.   PLoS One

PIIKA 2: An Expanded, Web-Based Platform for Analysis of Kinome Microarray Data

(2013) Brett Trost et al.   PLoS One

Using Functional Signature Ontology (FUSION) to Identify Mechanisms of Action for Natural Products

(2013) M. B. Potts et al.   Science Signaling

Global Screening of CK2 Kinase Substrates by an Integrated Phosphoproteomics Workflow

(2013) Yangyang Bian et al.   Scientific Reports

MMFPh: a maximal motif finder for phosphoproteomics datasets

(2012) Tuobin Wang et al.   BIOINFORMATICS

Identification of Targets of c-Src Tyrosine Kinase by Chemical Complementation and Phosphoproteomics

(2012) Isabel Martinez Ferrando et al.   MOLECULAR & CELLULAR PROTEOMICS

Sensitive kinase assay linked with phosphoproteomics for identifying direct kinase substrates

(2012) L. Xue et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus

(2011) Jason Kindrachuk et al.   MOLECULAR & CELLULAR PROTEOMICS

iTRAQ Labeling is Superior to mTRAQ for Quantitative Global Proteomics and Phosphoproteomics

(2011) Philipp Mertins et al.   MOLECULAR & CELLULAR PROTEOMICS

The mTOR-Regulated Phosphoproteome Reveals a Mechanism of mTORC1-Mediated Inhibition of Growth Factor Signaling

(2011) P. P. Hsu et al.   SCIENCE

Quantitative Phosphoproteomics Identifies Substrates and Functional Modules of Aurora and Polo-Like Kinase Activities in Mitotic Cells

(2011) A. N. Kettenbach et al.   Science Signaling

Receptor tyrosine kinase inhibition causes simultaneous bone loss and excess bone formation within growing bone in rats

(2011) Mirja Nurmio et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Vimentin induces changes in cell shape, motility, and adhesion during the epithelial to mesenchymal transition

(2010) Melissa G. Mendez et al.   FASEB JOURNAL

Studies of Phosphoproteomic Changes Induced by Nucleophosmin-Anaplastic Lymphoma Kinase (ALK) Highlight Deregulation of Tumor Necrosis Factor (TNF)/Fas/TNF-related Apoptosis-induced Ligand Signaling Pathway in ALK-positive Anaplastic Large Cell Lymphoma

(2010) Fang Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

Deciphering Protein Kinase Specificity Through Large-Scale Analysis of Yeast Phosphorylation Site Motifs

(2010) J. Mok et al.   Science Signaling

Quantitative Phosphoproteomics Reveals a Cluster of Tyrosine Kinases That Mediates Src Invasive Activity in Advanced Colon Carcinoma Cells

(2009) C. Leroy et al.   CANCER RESEARCH

Tyrosine phosphorylation: thirty years and counting

(2009) Tony Hunter   CURRENT OPINION IN CELL BIOLOGY

An Adaptor Role for Cytoplasmic Sam68 in Modulating Src Activity during Cell Polarization

(2009) M.-E. Huot et al.   MOLECULAR AND CELLULAR BIOLOGY

Identification of c-Src tyrosine kinase substrates in platelet-derived growth factor receptor signaling

(2009) Ramars Amanchy et al.   Molecular Oncology

Comparison of Peptide Array Substrate Phosphorylation of c-Raf and Mitogen Activated Protein Kinase Kinase Kinase 8

(2009) Kaushal Parikh et al.   PLoS One

Providing cellular signposts - Post-translational modifications of intermediate filaments

(2008) Claire L. Hyder et al.   FEBS LETTERS

Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays

(2008) Ramars Amanchy et al.   JOURNAL OF PROTEOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY