Transcriptome analysis of a Pseudomonas aeruginosa sn-glycerol-3-phosphate dehydrogenase mutant reveals a disruption in bioenergetics

ATP-Dependent Persister Formation in Escherichia coli

(2017) Yue Shan et al.   mBio

BEEP: An assay to detect bio-energetic and envelope permeability alterations in Pseudomonas aeruginosa

(2016) Sang-Jin Suh et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Bacterial persistence is an active σSstress response to metabolic flux limitation

(2016) Jakub Leszek Radzikowski et al.   Molecular Systems Biology

General and condition-specific essential functions ofPseudomonas aeruginosa

(2015) Samuel A. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress sigma factor RpoS degradation and translation are sensitive to the state of central metabolism

(2015) Aurelia Battesti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ranking of persister genes in the same Escherichia coli genetic background demonstrates varying importance of individual persister genes in tolerance to different antibiotics

(2015) Nan Wu et al.   Frontiers in Microbiology

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Impact of glycerol-3-phosphate dehydrogenase on virulence factor production by Pseudomonas aeruginosa

(2014) Jonathan B. Daniels et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Enzymatic Characterization and In Vivo Function of Five Terminal Oxidases in Pseudomonas aeruginosa

(2014) H. Arai et al.   JOURNAL OF BACTERIOLOGY

Proline Metabolism IncreaseskatGExpression and Oxidative Stress Resistance in Escherichia coli

(2014) Lu Zhang et al.   JOURNAL OF BACTERIOLOGY

Robustness and Plasticity of Metabolic Pathway Flux among Uropathogenic Isolates of Pseudomonas aeruginosa

(2014) Antje Berger et al.   PLoS One

Requirements for Pseudomonas aeruginosa Acute Burn and Chronic Surgical Wound Infection

(2014) Keith H. Turner et al.   PLoS Genetics

Metabolic aspects of bacterial persisters

(2014) Marcel Prax et al.   Frontiers in Cellular and Infection Microbiology

The role of metabolism in bacterial persistence

(2014) Stephanie M. Amato et al.   Frontiers in Microbiology

Sources of superoxide/H2O2 during mitochondrial proline oxidation

(2014) Renata L.S. Goncalves et al.   Redox Biology

Arrested Protein Synthesis Increases Persister-Like Cell Formation

(2013) Brian W. Kwan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Measurement of soil bacterial colony temperatures and isolation of a high heat-producing bacterium

(2013) Kenji Tabata et al.   BMC MICROBIOLOGY

A Bacterial Virulence Protein Promotes Pathogenicity by Inhibiting the Bacterium’s Own F1Fo ATP Synthase

(2013) Eun-Jin Lee et al.   CELL

A Comprehensive Analysis of In Vitro and In Vivo Genetic Fitness of Pseudomonas aeruginosa Using High-Throughput Sequencing of Transposon Libraries

(2013) David Skurnik et al.   PLoS Pathogens

The function and the role of the mitochondrial glycerol-3-phosphate dehydrogenase in mammalian tissues

(2012) Tomáš Mráček et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

RpoS proteolysis is controlled directly by ATP levels in Escherichia coli

(2012) C. N. Peterson et al.   GENES & DEVELOPMENT

Large mutational target size for rapid emergence of bacterial persistence

(2012) H. S. Girgis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial persistence increases as environmental fitness decreases

(2012) Seok Hoon Hong et al.   Microbial Biotechnology

Age of Inoculum Strongly Influences Persister Frequency and Can Mask Effects of Mutations Implicated in Altered Persistence

(2011) H. Luidalepp et al.   JOURNAL OF BACTERIOLOGY

Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis

(2011) Laurence Rohmer et al.   TRENDS IN MICROBIOLOGY

The RpoS-Mediated General Stress Response inEscherichia coli

(2010) Aurelia Battesti et al.   Annual Review of Microbiology

Ergatis: a web interface and scalable software system for bioinformatics workflows

(2010) J. Orvis et al.   BIOINFORMATICS

Study of the Action of Se and Cu on the Growth Metabolism of Escherichia coli by Microcalorimetry

(2010) Ling Ding et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

Emergence of Pseudomonas aeruginosa Strains Producing High Levels of Persister Cells in Patients with Cystic Fibrosis

(2010) L. R. Mulcahy et al.   JOURNAL OF BACTERIOLOGY

Polyamine biosynthesis and transport mechanisms are crucial for fitness and pathogenesis of Streptococcus pneumoniae

(2010) P. Shah et al.   MICROBIOLOGY-SGM

Ciprofloxacin Causes Persister Formation by Inducing the TisB toxin in Escherichia coli

(2010) Tobias Dörr et al.   PLOS BIOLOGY

Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway

(2010) Lucas R. Hoffman et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Differential expression of multiple terminal oxidases for aerobic respiration inPseudomonas aeruginosa

(2009) Takuro Kawakami et al.   ENVIRONMENTAL MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY