Population genetic diversity in zebrafish lines

Genomes of the Mouse Collaborative Cross

(2017) Anuj Srivastava et al.   GENETICS

Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[ a ]pyrene in zebrafish

(2017) Andrea L. Knecht et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Genomes of the Mouse Collaborative Cross

(2017) Anuj Srivastava et al.   GENETICS

Multilevel assessment of ivermectin effects using different zebrafish life stages

(2016) Rhaul Oliveira et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching

(2016) Douglas G. Howe et al.   NUCLEIC ACIDS RESEARCH

An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes

(2016) Yun Sung Cho et al.   Nature Communications

Long-read sequencing and de novo assembly of a Chinese genome

(2016) Lingling Shi et al.   Nature Communications

High-throughput characterization of chemical-associated embryonic behavioral changes predicts teratogenic outcomes

(2015) David M. Reif et al.   ARCHIVES OF TOXICOLOGY

SNPfisher: tools for probing genetic variation in laboratory-reared zebrafish

(2015) M. G. Butler et al.   DEVELOPMENT

Considerations for Using Genetic and Epigenetic Information in Occupational Health Risk Assessment and Standard Setting

(2015) P. A. Schulte et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE

The Scientific Basis of Uncertainty Factors Used in Setting Occupational Exposure Limits

(2015) D. A. Dankovic et al.   JOURNAL OF OCCUPATIONAL AND ENVIRONMENTAL HYGIENE

Longevity GWAS Using theDrosophilaGenetic Reference Panel

(2015) Dobril K. Ivanov et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish ( Danio rerio ) two-generation study

(2015) Róbert Kovács et al.   WATER RESEARCH

A Genome-Wide Association Study for Nutritional Indices in Drosophila

(2015) Robert L. Unckless et al.   G3-Genes Genomes Genetics

A Defined Zebrafish Line for High-Throughput Genetics and Genomics: NHGRI-1

(2014) Matthew C. LaFave et al.   GENETICS

Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains

(2014) C. A. Wilson et al.   GENETICS

Crude Oil Impairs Cardiac Excitation-Contraction Coupling in Fish

(2014) F. Brette et al.   SCIENCE

Zebrafish Breeding in the Laboratory Environment

(2013) A. Nasiadka et al.   ILAR JOURNAL

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Comprehensive Characterization of Human Genome Variation by High Coverage Whole-Genome Sequencing of Forty Four Caucasians

(2013) Hui Shen et al.   PLoS One

Inter-Individual and Inter-Strain Variations in Zebrafish Locomotor Ontogeny

(2013) Merlin Lange et al.   PLoS One

Multidimensional In Vivo Hazard Assessment Using Zebrafish

(2013) Lisa Truong et al.   TOXICOLOGICAL SCIENCES

A Sequence-Based Variation Map of Zebrafish

(2013) Ashok Patowary et al.   Zebrafish

SNP calling by sequencing pooled samples

(2012) Emanuele Raineri et al.   BMC BIOINFORMATICS

Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing

(2012) N. Obholzer et al.   DEVELOPMENT

High-Resolution Genetic Mapping Using the Mouse Diversity Outbred Population

(2012) Karen L. Svenson et al.   GENETICS

The diversity outbred mouse population

(2012) Gary A. Churchill et al.   MAMMALIAN GENOME

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Efficient Mapping and Cloning of Mutations in Zebrafish by Low-Coverage Whole-Genome Sequencing

(2011) M. E. Bowen et al.   GENETICS

Comparative Analysis of Teleost Genome Sequences Reveals an Ancient Intron Size Expansion in the Zebrafish Lineage

(2011) Stephen P. Moss et al.   Genome Biology and Evolution

Subspecific origin and haplotype diversity in the laboratory mouse

(2011) Hyuna Yang et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis

(2011) K. H. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

(2011) Naoki Irie et al.   Nature Communications

Analysis of Eight Oil Spill Dispersants Using Rapid, In Vitro Tests for Endocrine and Other Biological Activity

(2010) Richard S. Judson et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Comparison of the toxicity of silver, gold and platinum nanoparticles in developing zebrafish embryos

(2010) P. V. Asharani et al.   Nanotoxicology

Endosulfan I and endosulfan sulfate disrupts zebrafish embryonic development

(2009) Kerri A. Stanley et al.   AQUATIC TOXICOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Toxicity of zinc oxide nanoparticles to zebrafish embryo: a physicochemical study of toxicity mechanism

(2009) Wei Bai et al.   JOURNAL OF NANOPARTICLE RESEARCH

A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds

(2009) James W. Kijas et al.   PLoS One

Comparative Analysis of CpG Islands in Four Fish Genomes

(2008) Leng Han et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

The Collaborative Cross at Oak Ridge National Laboratory: developing a powerful resource for systems genetics

(2008) Elissa J. Chesler et al.   MAMMALIAN GENOME

Is Sleep Essential?

(2008) Chiara Cirelli et al.   PLOS BIOLOGY