4.4 Article

Characterization of Flavobacterium aquimarinum sp nov., a halotolerant bacterium isolated from seawater

Journal

JOURNAL OF MICROBIOLOGY
Volume 56, Issue 5, Pages 317-323

Publisher

MICROBIOLOGICAL SOCIETY KOREA
DOI: 10.1007/s12275-018-7454-3

Keywords

Flavobacterium aquimarinum sp nov.; seawater; halotolerant; Flavobacteriaceae; bacteroidetes

Categories

Funding

  1. National Research Foundation of Korea [NRF-2013M3A2A1067498]
  2. National Research Foundation of Korea - Ministry of Education [2016-R1D1A1A09916982]
  3. National Research Foundation of Korea [2013M3A2A1067498] Funding Source: Korea Institute of Science & Technology Information (KISTI), National Science & Technology Information Service (NTIS)

Ask authors/readers for more resources

A novel, aerobic, Gram-stain-negative, non-motile, non-spore forming, rod-shaped bacterium, designated strain Dol 15-39(T), was isolated from a seawater sample near Geoje Island in the South Sea, Republic of Korea. The strain was found to be oxidase-negative and catalase-positive. The isolate was observed to grow at temperatures from 4 to 37 degrees C, at salinities of up to 7%, and at pH levels from 6 to 9; moreover, it was not able to degrade starch, DNA, esculin, or tyrosine. Phylogenetic analysis based on 16S rRNA gene sequences showed that Dol 15-39(T) was most closely related to Flavobacterium jumunjinense HME7102(T) with a sequence similarity of 97.3%. However, the levels of DNA-DNA relatedness between Dol 15-39(T) and the most closely related species were much lower than 70%, confirming that they represented distinct genomic species. The genomic DNA G + C content of Dol 15-39(T) was calculated to be 32.6 mol%. MK-6 was the predominant respiratory quinine, while iso-C-15:0 (25.0%), iso-C-15:1 G (17.0%), and iso-C-17:0 3-OH (10.4%) were the major cellular fatty acids. Phosphatidylethanolamine was identified as a major polar lipid, while various unidentified aminolipids and polar lipids were also detected. Based on polyphasic taxonomic data, Dol 15-39(T) represents a novel species of the genus Flavobacterium, for which the name F. aquimarinum sp. nov. is proposed. The type strain is accessible under the culture collection numbers (KEMB 9005-617(T) = JCM 31930(T)).

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Applied

Phytochemicals, nutritional, antioxidant activity, and sensory analyses ofMoringa oleiferaLam. collected from mid-hill region of Nepal

Yadav Kc, Ruby Rai, Nirat Katuwal, Lila Devi Shiwakoti, Bhoj Raj Pant, Tirtha Raj Bajgai, Srijana Dura, Dhiraj Kumar Chaudhary, Vijaya Raghavan, Jitendra Upadhyaya

Summary: The study aimed to assess the phytochemicals, nutritional compositions, antioxidant activity, and sensory properties of Moringa oleifera extracts. Results showed that mixture A had the highest nutritional value and antioxidant activity, while mixture D ranked high in sensory attributes, suggesting the equal proportion of leaves and pods powder of M. oleifera is suitable for food product development.

NATURAL PRODUCT RESEARCH (2022)

Article Microbiology

Luteolibacter luteussp. nov., isolated from stream bank soil

Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim

Summary: A novel yellow-colored bacterium G-1-1-1(T) was isolated from soil at Gwanggyo stream bank in Gyeonggi-do, Korea, which belongs to the genus Luteolibacter. It showed unique biochemical and genomic characteristics, suggesting it represents a new species named Luteolibacter luteus sp. nov. The strain showed particular phenotypic, chemotaxonomic and phylogenetic features.

ARCHIVES OF MICROBIOLOGY (2021)

Article Microbiology

Noviherbaspirillum pedocola sp. nov., isolated from oil-contaminated experimental soil

Dhiraj Kumar Chaudhary, Ram Hari Dahal, Yongseok Hong

Summary: A novel species named Noviherbaspirillum pedocola was isolated from oil-contaminated soil, showing unique physiological characteristics and chemical compositions. This strain DKR-6 (T) represents a valuable reference for environmental microbiology research.

ARCHIVES OF MICROBIOLOGY (2021)

Article Environmental Sciences

Effect of biochar amendment on compost quality, gaseous emissions and pathogen reduction during in-vessel composting of chicken manure

Woo Jin Chung, Soon Woong Chang, Dhiraj Kumar Chaudhary, JoungDu Shin, Hyunook Kim, Natchimuthu Karmegam, Muthusamy Govarthanan, Murugesan Chandrasekaran, Balasubramani Ravindran

Summary: Adding 10% biochar during in-vessel chicken manure composting showed the most significant effects on improving compost nutrient quality, reducing gaseous emissions, and controlling pathogenic microorganisms. The study highlights the benefits of biochar addition in enhancing compost quality and environmental safety during the composting process.

CHEMOSPHERE (2021)

Article Environmental Sciences

Insights into the biodegradation of diesel oil and changes in bacterial communities in diesel-contaminated soil as a consequence of various soil amendments

Dhiraj Kumar Chaudhary, Rishikesh Bajagain, Seung-Woo Jeong, Jaisoo Kim

Summary: Soil amendment is a promising strategy to enhance the biodegradation capacity of indigenous bacteria. Different soil amendments have varying effects on diesel degradation efficiency and bacterial communities, with nutrients and biochar amendments showing potential to improve biodegradation and soil physiological functions. Bacterial diversity decreases and potential diesel-degrading bacteria appear in response to soil amendments, while surfactants, oxidants, and iron nanoparticles may reduce diesel degradation efficiency.

CHEMOSPHERE (2021)

Article Microbiology

Cellulomonas fulva sp. nov., isolated from oil- contaminated soil

Ram Hari Dahal, Jungmin Kim, Dong-Uk Kim, Ke Dong, Yongseok Hong, Dhiraj Kumar Chaudhary

Summary: A new bacterial species belonging to the genus Cellulomonas was isolated from oil-contaminated soil. This strain, named Cellulomonas fulva sp. nov., is gram-positive, motile, aerobic, and rod-shaped. It showed growth at a wide pH and temperature range, and had high tolerance to salt. Phylogenetic analysis revealed its close relationship with other members of the genus Cellulomonas.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2022)

Article Environmental Sciences

Reduction in mercury bioavailability to Asian clams (Corbicula fluminea) and changes in bacterial communities in sediments with activated carbon amendment

Mark Xavier Bailon, Minoh Park, Kurt Louis Solis, Yeong Na, Dhiraj Kumar Chaudhary, Sungpyo Kim, Yongseok Hong

Summary: This study investigated the mechanisms controlling the reduction of mercury (Hg) bioavailability in activated carbon (AC) amended estuarine sediments. The results showed that AC amendment decreased Hg bioavailability not only through physicochemical sorption, but also by changing geochemical species and shifting the microbial community composition. These findings are important for managing and remediating Hg contaminated sediments.

CHEMOSPHERE (2022)

Article Environmental Sciences

Seasonal trends of mercury bioaccumulation and assessment of toxic effects in Asian clams and microbial community from field study of estuarine sediment

Dhiraj Kumar Chaudhary, Hwansuk Kim, Danny Reible, Mikyung Lee, Sunyoung Kim, Lan Hee Kim, Sungpyo Kim, Yongseok Hong

Summary: This study investigated the seasonal trends in bioaccumulation potential and toxic effects of mercury in Asian clams and microbial community. The results showed that mercury accumulation in clams and pore water was highest during the summer season at contaminated sites. The upregulation of biomarker genes in clams indicated their response to mercury contamination. High levels of mercury negatively affected bacterial and metabolic diversities.

ENVIRONMENTAL RESEARCH (2022)

Article Biodiversity Conservation

Genome Insight and Description of Previously Uncultured N2-Fixing Bacterium Rhizobium terricola sp. nov., Isolated from Forest Rhizospheric Soil by Using Modified Culture Method

Ram Hari Dahal, Dhiraj Kumar Chaudhary, Jungmin Kim, Dong-Uk Kim, Jaisoo Kim

Summary: A new bacterial species, Rhizobium terricola, was isolated from rhizospheric forest soil at Kyonggi University. It belongs to the genus Rhizobium within the family Rhizobiaceae and has unique characteristics such as a unique respiratory quinone and major polar lipids. The identification was based on phylogenetic analysis and polyphasic taxonomic study.

DIVERSITY-BASEL (2022)

Article Environmental Sciences

Enrichment cultivation of VOC-degrading bacteria using diffusion bioreactor and development of bacterial-immobilized biochar for VOC bioremediation

Dhiraj Kumar Chaudhary, Joung-Ho Park, Pil -Gon Kim, Yong Sik Ok, Yongseok Hong

Summary: This study successfully enriched and isolated multiple VOC-degrading bacteria using a newly designed diffusion bioreactor. The most effective bacteria were then immobilized on rice husk-derived biochar to develop a biochar-bacteria combination. The results showed that this combination achieved the highest remediation rate of over 90% for various VOCs.

ENVIRONMENTAL POLLUTION (2023)

Article Environmental Sciences

Depth-dependent microbial communities potentially mediating mercury methylation and various geochemical processes in anthropogenically affected sediments

Dhiraj Kumar Chaudhary, Rishikesh Bajagain, Donggyun Seo, Yongseok Hong, Seunghee Han

Summary: Metal contamination and other geochemical alterations disrupt microbial composition and functional activities, leading to disturbances in biogeochemical cycles. This study investigated the distribution of total mercury (THg), methylmercury (MeHg), and trace metals in anthropogenically affected sediment. The microbial communities and functional gene profiles were analyzed to explore their relationship with Hg-methylation and geochemical features. Results showed that THg and MeHg levels increased towards the lower horizons of the sediment cores, while Al, Fe, Mn, and Zn were the major metals present at all depths. The enrichment and contamination indices indicated high concentrations of trace metals in the anthropogenically affected sediment. Various functional genes and dominant microbial taxa were detected, with correlations between major taxa and geochemical variables suggesting the significant impact of sediment geochemistry on microbial communities and biogeochemical cycles. Archaeal methanogens and bacterial phyla Chloroflexi and Firmicutes were also implicated in the enhancement of MeHg levels. Overall, these findings provide insights into the microbial communities involved in Hg-methylation process and other biogeochemical cycles.

ENVIRONMENTAL RESEARCH (2023)

Article Biotechnology & Applied Microbiology

Utilizing Coffee Pulp and Mucilage for Producing Alcohol-Based Beverage

K. C. Yadav, Raju Subba, Lila Devi Shiwakoti, Pramesh Kumar Dhungana, Rishikesh Bajagain, Dhiraj Kumar Chaudhary, Bhoj Raj Pant, Tirtha Raj Bajgai, Janardan Lamichhane, Sampada Timilsina, Jitendra Upadhyaya, Ram Hari Dahal

Summary: The study indicates that alcoholic beverages of high quality can be developed by using coffee pulp and mucilage. A beverage made from pulp showed superior phenolic characteristics and chemical parameters in sensory analysis compared to other types. There is potential for further refinement of the process and quality of beverages produced from pulp and mucilage.

FERMENTATION-BASEL (2021)

Article Microbiology

Genome Sequence of Hymenobacter polaris RP-2-7T, Isolated from Arctic Soil

Aravind Sundararaman, Ram Hari Dahal, Dong-Uk Kim, Jaisoo Kim, Jitendra Upadhyaya, Yongseok Hong, Dhiraj Kumar Chaudhary

Summary: Hymenobacter polaris RP-2-7(T) was isolated from soil in the Arctic region, and its genome sequence shows a high DNA G+C content.

MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2021)

Article Microbiology

Caenimonas soli sp. nov., isolated from soil

Ram Hari Dahal, Hyosun Lee, Dhiraj Kumar Chaudhary, Dae-Young Kim, Jigwan Son, Jaisoo Kim, Jong-Ok Ka, Dong-Uk Kim

Summary: The bacterium strain S4(T) isolated from soil in South Korea belongs to the Comamonadaceae family and exhibits unique biological characteristics and DNA sequences, leading to the proposal of a new species named Caenimonas soli sp. nov., with S4(T) designated as the type strain.

ARCHIVES OF MICROBIOLOGY (2021)

Article Microbiology

Nakamurella aerolata sp. Nov., Isolated from an Automobile Air Conditioning System

Dhiraj Kumar Chaudhary, Hyosun Lee, Ram Hari Dahal, Dae Young Kim, In-Tae Cha, Ki-eun Lee, Dong-Uk Kim

Summary: A novel white-colored, aerobic, Gram-stain-positive, rod-shaped bacterium named strain DB0629 (T) was isolated from a motor car evaporator core collected in South Korea. It belongs to the genus Nakamurella and a new species Nakamurella aerolata sp. nov. is proposed based on polyphasic taxonomic data, with the type strain DB0629(T).

CURRENT MICROBIOLOGY (2021)

No Data Available