A case of haemolytic uraemic syndrome (HUS) revealed an outbreak of Shiga toxin-2-producing Escherichia coli O26:H11 infection in a nursery, with long-lasting shedders and person-to-person transmission, Italy 2015

Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery

(2017) J. MORAN-GILAD et al.   EPIDEMIOLOGY AND INFECTION

A 10-year analysis of VTEC microbiological clearance times, in the under-six population of the Midlands, Ireland

(2017) A. COLLINS et al.   EPIDEMIOLOGY AND INFECTION

Molecular characterisation of human Shiga toxin-producing Escherichia coli O26 strains: results of an outbreak investigation, Romania, February to August 2016

(2017) Codruţa-Romaniţa Usein et al.   Eurosurveillance

Associations Between Hydration Status, Intravenous Fluid Administration, and Outcomes of Patients Infected With Shiga Toxin–Producing Escherichia coli

(2017) Silviu Grisaru et al.   JAMA Pediatrics

Shiga Toxin–ProducingEscherichia coliInfection, Antibiotics, and Risk of Developing Hemolytic Uremic Syndrome: A Meta-analysis

(2016) Stephen B. Freedman et al.   CLINICAL INFECTIOUS DISEASES

Editorial Commentary: Increasing Evidence That Certain Antibiotics Should Be Avoided for Shiga Toxin–ProducingEscherichia coliInfections: More Data Needed

(2016) Rajal K. Mody et al.   CLINICAL INFECTIOUS DISEASES

Prevention of secondary household transmission during Shiga toxin-producing Escherichia coli outbreaks

(2016) K. TOKUDA et al.   EPIDEMIOLOGY AND INFECTION

Community-wide outbreak of haemolytic uraemic syndrome associated with Shiga toxin 2-producingEscherichia coliO26:H11 in southern Italy, summer 2013

(2016) Cinzia Germinario et al.   Eurosurveillance

Haemolytic uraemic syndrome

(2016) Diana Karpman et al.   JOURNAL OF INTERNAL MEDICINE

Development of a High Resolution Virulence Allelic Profiling (HReVAP) Approach Based on the Accessory Genome of Escherichia coli to Characterize Shiga-Toxin Producing E. coli (STEC)

(2016) Valeria Michelacci et al.   Frontiers in Microbiology

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome: Table 1

(2015) Shea N Gardner et al.   BIOINFORMATICS

Enterohemorrhagic Escherichia coli outbreaks related to childcare facilities in Japan, 2010–2013

(2015) Atsuhiro Kanayama et al.   BMC INFECTIOUS DISEASES

Verotoxigenic Escherichia coli transmission in Ireland: a review of notified outbreaks, 2004–2012

(2015) P. GARVEY et al.   EPIDEMIOLOGY AND INFECTION

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Implications of screening and childcare exclusion policies for children with Shiga-toxin producing Escherichia coli infections: lessons learned from an outbreak in a daycare centre, Norway, 2012

(2014) Emily MacDonald et al.   BMC INFECTIOUS DISEASES

Defining pathogenic verocytotoxin-producing Escherichia coli (VTEC) from cases of human infection in the European Union, 2007–2010

(2014) W. MESSENS et al.   EPIDEMIOLOGY AND INFECTION

The utility and public health implications of PCR and whole genome sequencing for the detection and investigation of an outbreak of Shiga toxin-producing Escherichia coli serogroup O26:H11

(2014) T. J. DALLMAN et al.   EPIDEMIOLOGY AND INFECTION

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Outbreak of Escherichia coli O157:H7 in a child care center in Cook County, Illinois, with prolonged shedding and household transmission

(2013) Lauren Gallagher et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Enterohemorrhagic Escherichia coli O26:H11/H−: A New Virulent Clone Emerges in Europe

(2013) Martina Bielaszewska et al.   CLINICAL INFECTIOUS DISEASES

Duration of shedding of Verocytotoxin-producing Escherichia coli in children and risk of transmission in childcare facilities in England

(2013) G. DABKE et al.   EPIDEMIOLOGY AND INFECTION

Ciprofloxacin reduces the risk of hemolytic uremic syndrome in patients with Escherichia coli O104:H4-associated diarrhea

(2013) H. F. Geerdes-Fenge et al.   INFECTION

Association Between Azithromycin Therapy and Duration of Bacterial Shedding Among Patients With Shiga Toxin–Producing Enteroaggregative Escherichia coli O104:H4

(2012) Martin Nitschke et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

(2012) Andrew Tritt et al.   PLoS One

Duration of Shedding and Secondary Household Transmission of Shiga Toxin–ProducingEscherichia coliO26 During an Outbreak in a Childcare Center, Oregon, October–December 2010

(2012) Mathieu Tourdjman et al.   Journal of the Pediatric Infectious Diseases Society

Virulence gene profiling of enterohemorrhagic (EHEC) and enteropathogenic (EPEC) Escherichia coli strains: a basis for molecular risk assessment of typical and atypical EPEC strains

(2011) Marie Bugarel et al.   BMC MICROBIOLOGY

Outbreak of Shiga Toxin-producing Escherichia coli Serotype O26

(2011) Jennifer A. Brown et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL