Conserved roles of Osiris genes in insect development, polymorphism and protection

Genetic basis of octanoic acid resistance inDrosophila sechellia: functional analysis of a fine-mapped region

(2017) J. M. Andrade López et al.   MOLECULAR ECOLOGY

Editorial overview: Development and regulation: The diverse traits that have facilitated the successful radiation of insects

(2017) Yoshinori Tomoyasu et al.   Current Opinion in Insect Science

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta

(2016) Michael R. Kanost et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Infections with the Sexually Transmitted Pathogen Nosema apis Trigger an Immune Response in the Seminal Fluid of Honey Bees (Apis mellifera)

(2016) Julia Grassl et al.   JOURNAL OF PROTEOME RESEARCH

Recurrent specialization on a toxic fruit in an islandDrosophilapopulation

(2016) Amir Yassin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal phenotype-specific transcriptional reprogramming during metamorphosis in the European map butterflyAraschnia levana

(2016) Andreas Vilcinskas et al.   Ecology and Evolution

The Gene Expression Program for the Formation of Wing Cuticle in Drosophila

(2016) Lukasz F. Sobala et al.   PLoS Genetics

Discrimination of haploid and diploid males of Bombus terrestris (Hymenoptera; Apidae) based on wing shape

(2015) Maxence Gerard et al.   APIDOLOGIE

Analysis of 5’ gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals

(2015) Nathaniel J. Davies et al.   BMC EVOLUTIONARY BIOLOGY

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

(2015) Mark A. Miller et al.   Evolutionary Bioinformatics

Caste-biases in gene expression are specific to developmental stage in the antFormica exsecta

(2015) C. Morandin et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites

(2015) Chris R. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reproductive workers show queenlike gene expression in an intermediately eusocial insect, the buff-tailed bumble beeBombus terrestris

(2015) Mark C. Harrison et al.   MOLECULAR ECOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology

(2015) Christian Schmitt-Engel et al.   Nature Communications

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Molecular traces of alternative social organization in a termite genome

(2014) Nicolas Terrapon et al.   Nature Communications

The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

(2014) Ariel D. Chipman et al.   PLOS BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

nhmmer: DNA homology search with profile HMMs

(2013) T. J. Wheeler et al.   BIOINFORMATICS

Control of Airway Tube Diameter and Integrity by Secreted Chitin-Binding Proteins in Drosophila

(2013) Katarína Tiklová et al.   PLoS One

Transcriptional Response of Honey Bee Larvae Infected with the Bacterial Pathogen Paenibacillus larvae

(2013) Robert Scott Cornman et al.   PLoS One

Negative Regulation of the Novel norpAP24 Suppressor, diehard4, in the Endo-lysosomal Trafficking Underlies Photoreceptor Cell Degeneration

(2013) Jongwoo Lee et al.   PLoS Genetics

Innate Sensing of Chitin and Chitosan

(2013) Chelsea L. Bueter et al.   PLoS Pathogens

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Dusky-like functions as a Rab11 effector for the deposition of cuticle during Drosophila bristle development

(2012) R. Nagaraj et al.   DEVELOPMENT

Genes Involved in the Evolution of Herbivory by a Leaf-Mining, Drosophilid Fly

(2012) Noah K. Whiteman et al.   Genome Biology and Evolution

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The cellular basis of chitin synthesis in fungi and insects: Common principles and differences

(2011) Hans Merzendorfer   EUROPEAN JOURNAL OF CELL BIOLOGY

Draft genome of the red harvester ant Pogonomyrmex barbatus

(2011) C. R. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional responses in Honey Bee larvae infected with chalkbrood fungus

(2010) Katherine A Aronstein et al.   BMC GENOMICS

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator

(2010) R. Bonasio et al.   SCIENCE

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chymotrypsin-like peptidases from Tribolium castaneum: A role in molting revealed by RNA interference

(2009) Gunnar Broehan et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

(2007) Pawel Michalak   GENOMICS