Metagenomic and Metatranscriptomic Analyses of Bacterial Communities Derived From a Calcifying Karst Water Creek Biofilm and Tufa

Phylogenetic Analysis of a Microbialite-Forming Microbial Mat from a Hypersaline Lake of the Kiritimati Atoll, Central Pacific

(2013) Dominik Schneider et al.   PLoS One

Benthic bacterial diversity from freshwater tufas of the Iberian Range (Spain)

(2012) Hugo Beraldi-Campesi et al.   FEMS MICROBIOLOGY ECOLOGY

Identification of Active Denitrifiers in Rice Paddy Soil by DNA- and RNA-Based Analyses

(2012) Megumi Yoshida et al.   MICROBES AND ENVIRONMENTS

Temperature-related changes in polar cyanobacterial mat diversity and toxin production

(2012) Julia Kleinteich et al.   Nature Climate Change

Within-Mat Variability in Anatoxin-a and Homoanatoxin-a Production among Benthic Phormidium (Cyanobacteria) Strains

(2012) Susanna A. Wood et al.   Toxins

Calcite Biomineralization by Bacterial Isolates from the Recently Discovered Pristine Karstic Herrenberg Cave

(2011) Anna Rusznyák et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies

(2011) H. James Tripp et al.   NUCLEIC ACIDS RESEARCH

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Multi-scale study of the role of the biofilm in the formation of minerals and fabrics in calcareous tufa

(2011) Edoardo Perri et al.   SEDIMENTARY GEOLOGY

Characterization of Glycoconjugates of Extracellular Polymeric Substances in Tufa-Associated Biofilms by Using Fluorescence Lectin-Binding Analysis

(2010) B. Zippel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation and Characterization of Exopolysaccharides Produced by the Cyanobacterium Limnothrix redekei PUPCCC 116

(2010) J. I. S. Khattar et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

(2010) Mia M Bengtsson et al.   BMC MICROBIOLOGY

Influence of microbial photosynthesis on tufa stromatolite formation and ambient water chemistry, SW Japan

(2010) Fumito Shiraishi et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Spatial Bacterial Diversity in a Recent Freshwater Tufa Deposit

(2010) Sylvie Cousin et al.   GEOMICROBIOLOGY JOURNAL

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

(2010) Frank J Stewart et al.   ISME Journal

Bioconservation of Deteriorated Monumental Calcarenite Stone and Identification of Bacteria with Carbonatogenic Activity

(2010) Fadwa Jroundi et al.   MICROBIAL ECOLOGY

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Visualization of ribosomal RNA operon copy number distribution

(2009) Rajat Rastogi et al.   BMC MICROBIOLOGY

Flavobacterium rivuli sp. nov., Flavobacterium subsaxonicum sp. nov., Flavobacterium swingsii sp. nov. and Flavobacterium reichenbachii sp. nov., isolated from a hard water rivulet

(2009) Z. Ali et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Metabolic Microenvironmental Control by Photosynthetic Biofilms under Changing Macroenvironmental Temperature and pH Conditions

(2008) A. Bissett et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Flavobacterial Community Structure in a Hardwater Rivulet and Adjacent Forest Soil, Harz Mountain, Germany

(2008) Sylvie Cousin   CURRENT MICROBIOLOGY

Photosynthesis, Respiration and Exopolymer Calcium-Binding in Biofilm Calcification (Westerhöfer and Deinschwanger Creek, Germany)

(2008) Fumito Shiraishi et al.   GEOMICROBIOLOGY JOURNAL

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany)

(2008) Fumito Shiraishi et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY