4.3 Article

Ribosomal Tag Pyrosequencing of DNA and RNA Reveals Rare Taxa with High Protein Synthesis Potential in the Sediment of a Hypersaline Lake in Western Australia

Journal

GEOMICROBIOLOGY JOURNAL
Volume 33, Issue 5, Pages 426-440

Publisher

TAYLOR & FRANCIS INC
DOI: 10.1080/01490451.2015.1049304

Keywords

Salinivibrio; Planococcus; microbial community composition; microbial diversity; rare biosphere; KTK 4A cluster; ribosomal sequence tags; Marine Benthic Group B; microbial activity; Marine Benthic Group D; salt lake; Halomonas; Idiomarina

Funding

  1. research unit Natural Halogenation Processes in the Environment - Atmosphere and Soil - German Research Foundation (DFG) [763]

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Little is known about the potential activity of microbial communities in hypersaline sediment ecosystems. Ribosomal tag libraries of DNA and RNA extracted from the sediment of Lake Strawbridge (Western Australia) revealed bacterial and archaeal operational taxonomic units (OTUs) with high RNA/DNA ratios providing evidence for the presence of 'rare' but potentially active taxa. Among the 'rare' bacterial taxa Halomonas, Salinivibrio and Idiomarina showed the highest protein synthesis potential. Rare but 'active' archaeal OTUs were related to the KTK 4A cluster and the Marine-Benthic-Groups B and D. We present the first molecular analysis of the microbial diversity and protein synthesis potential of rare microbial taxa in a hypersaline sediment ecosystem.

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