4.7 Article

Activation Dynamics of the Neurotensin G Protein-Coupled Receptor 1

Journal

JOURNAL OF CHEMICAL THEORY AND COMPUTATION
Volume 14, Issue 8, Pages 4467-4473

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.jctc.8b00216

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Funding

  1. German Research Foundation (Deutsche Forschungsgemeinschaft, DFG) [CO 1715/1-1]
  2. French National Research Agency (Agence Nationale de la Recherche, ANR)
  3. U.S. National Science Foundation (NSF) as part of the Collaborative Research in Computational Neuroscience
  4. French government, through the UCAJEDI Investments in the Future project [ANR-15-IDEX-01]

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A replica-exchange protocol remarkably enhances the sampling of the activation dynamics of the neurotensin receptor type 1, a G protein-coupled receptor (GPCR) and important drug target. Our work highlights the dynamic communication between conformational changes of the agonist and the G protein-binding site, via contraction-oscillation of the orthosteric pocket. It also gives insights into the mechanism by which certain mutations diminish or stimulate activation. The replica-exchange protocol effectively enhances barrier crossing where standard brute-force molecular dynamics simulations fail. It is readily applicable to other GPCRs and represents a promising approach for virtual ligand screening, using the typical features of receptor activation as a benchmark.

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