Genome characterization of piscine ‘Scale drop and Muscle Necrosis syndrome’-associated strain of Vibrio harveyi focusing on bacterial virulence determinants

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Examination of the effects of Campylobacter concisus zonula occludens toxin on intestinal epithelial cells and macrophages

(2016) Vikneswari Mahendran et al.   Gut Pathogens

Zonula occludens toxins and their prophages in Campylobacter species

(2016) Fang Liu et al.   Gut Pathogens

BPGA- an ultra-fast pan-genome analysis pipeline

(2016) Narendrakumar M. Chaudhari et al.   Scientific Reports

Association of CRISPR/Cas Evolution withVibrio parahaemolyticusVirulence Factors and Genotypes

(2015) Honghu Sun et al.   Foodborne Pathogens and Disease

Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792

(2015) Iliana Espinoza-Valles et al.   MICROBIOLOGY-SGM

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences

(2013) H. Urbanczyk et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

GapFiller: a de novo assembly approach to fill the gap within paired reads

(2012) Francesca Nadalin et al.   BMC BIOINFORMATICS

Pyoverdine biosynthesis and secretion inPseudomonas aeruginosa: implications for metal homeostasis

(2012) Isabelle J. Schalk et al.   ENVIRONMENTAL MICROBIOLOGY

Virulence genes and pathogenicity islands in environmentalVibriostrains nonpathogenic to humans

(2012) Micol Gennari et al.   FEMS MICROBIOLOGY ECOLOGY

Draft Genome Sequence of the Fish Pathogen Vibrio harveyi Strain ZJ0603

(2012) Yucong Huang et al.   JOURNAL OF BACTERIOLOGY

Pathogenesis, virulence factors and virulence regulation of vibrios belonging to the Harveyi clade

(2012) Hettipala Arachchige Darshanee Ruwandeepika et al.   Reviews in Aquaculture

Multilocus sequence analysis provides basis for fast and reliable identification of Vibrio harveyi-related species and reveals previous misidentification of important marine pathogens

(2011) Ana Cano-Gomez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

The active Zot domain (aa 288–293) increases ZO-1 and myosin 1C serine/threonine phosphorylation, alters interaction between ZO-1 and its binding partners, and induces tight junction disassembly through proteinase activated receptor 2 activation

(2010) Simeon E. Goldblum et al.   FASEB JOURNAL

The contribution of mobile genetic elements to the evolution and ecology of Vibrios

(2010) Tracy H. Hazen et al.   FEMS MICROBIOLOGY ECOLOGY

Presence of typical and atypical virulence genes in vibrio isolates belonging to the Harveyi clade

(2010) H.A.D. Ruwandeepika et al.   JOURNAL OF APPLIED MICROBIOLOGY

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

Identification ofVibrio harveyiIsolated from Diseased Asian SeabassLates calcariferby Use of 16S Ribosomal DNA Sequencing

(2009) Julian Ransangan et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii

(2009) Baochuan Lin et al.   Environmental Microbiology Reports