Comparisons of bacterial and archaeal communities in the rumen and a dual-flow continuous culture fermentation system using amplicon sequencing

Changes in fermentation and biohydrogenation intermediates in continuous cultures fed low and high levels of fat with increasing rates of starch degradability

(2016) G.J. Lascano et al.   JOURNAL OF DAIRY SCIENCE

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Insights into Abundant Rumen Ureolytic Bacterial Community Using Rumen Simulation System

(2016) Di Jin et al.   Frontiers in Microbiology

A Metagenomics Approach to Evaluate the Impact of Dietary Supplementation with Ascophyllum nodosum or Laminaria digitata on Rumen Function in Rusitec Fermenters

(2016) Alejandro Belanche et al.   Frontiers in Microbiology

Changes in Rumen Microbial Community Composition during Adaption to an In Vitro System and the Impact of Different Forages

(2016) Melanie B. Lengowski et al.   PLoS One

Effects of Isoflavone-Enriched Feed on the Rumen Microbiota in Dairy Cows

(2016) Jitka Kasparovska et al.   PLoS One

Efficient anaerobic transformation of raw wheat straw by a robust cow rumen-derived microbial consortium

(2015) Adèle Lazuka et al.   BIORESOURCE TECHNOLOGY

Effect of urea inclusion in diets containing corn dried distillers grains on feedlot cattle performance, carcass characteristics, ruminal fermentation, total tract digestibility, and purine derivatives-to-creatinine index

(2015) I. Ceconi et al.   JOURNAL OF ANIMAL SCIENCE

Design and Validation of Four New Primers for Next-Generation Sequencing To Target the 18S rRNA Genes of Gastrointestinal Ciliate Protozoa

(2014) Suzanne L. Ishaq et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

(2013) S.Y. Mao et al.   ANAEROBE

Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis

(2013) R. M. Petri et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Addition of potassium carbonate to continuous cultures of mixed ruminal bacteria shifts volatile fatty acids and daily production of biohydrogenation intermediates

(2013) T.C. Jenkins et al.   JOURNAL OF DAIRY SCIENCE

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

(2012) Xiaolei Ze et al.   ISME Journal

A meta-analysis of variability in continuous-culture ruminal fermentation and digestibility data

(2012) A.N. Hristov et al.   JOURNAL OF DAIRY SCIENCE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet

(2011) Yanhong Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Phylogenetic diversity of bacterial communities in bovine rumen as affected by diets and microenvironments

(2011) Minseok Kim et al.   FOLIA MICROBIOLOGICA

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Improved protocol for high-quality Co-extraction of DNA and RNA from rumen digesta

(2010) M. Popova et al.   FOLIA MICROBIOLOGICA

pH dynamics and bacterial community composition in the rumen of lactating dairy cows

(2010) A. Palmonari et al.   JOURNAL OF DAIRY SCIENCE

Host specificity of the ruminal bacterial community in the dairy cow following near-total exchange of ruminal contents1

(2010) P.J. Weimer et al.   JOURNAL OF DAIRY SCIENCE

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

Bacterial diversity dynamics in rumen epithelium of wethers fed forage and mixed concentrate forage diets

(2010) S. Sadet-Bourgeteau et al.   VETERINARY MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An Efficient RNA Extraction Method for Estimating Gut Microbial Diversity by Polymerase Chain Reaction

(2009) Seungha Kang et al.   CURRENT MICROBIOLOGY

Investigating unsaturated fat, monensin, or bromoethanesulfonate in continuous cultures retaining ruminal protozoa. I. Fermentation, biohydrogenation, and microbial protein synthesis

(2009) S.K.R. Karnati et al.   JOURNAL OF DAIRY SCIENCE

Evaluation of the fermentation dynamics of soluble crude protein from three protein sources in continuous culture fermenters1

(2008) A. Bach et al.   JOURNAL OF ANIMAL SCIENCE