Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi

Animal-like prostaglandins in marine microalgae

(2017) Valeria Di Dato et al.   ISME Journal

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom

(2017) Swaraj Basu et al.   NEW PHYTOLOGIST

LC-MS/MS versus TLC plus GC methods: Consistency of glycerolipid and fatty acid profiles in microalgae and higher plant cells and effect of a nitrogen starvation

(2017) Juliette Jouhet et al.   PLoS One

Trait changes induced by species interactions in two phenotypically distinct strains of a marine dinoflagellate

(2016) Sylke Wohlrab et al.   ISME Journal

Fear of large carnivores causes a trophic cascade

(2016) Justin P. Suraci et al.   Nature Communications

Grazer-induced chain length plasticity reduces grazing risk in a marine diatom

(2016) Johanna Bergkvist et al.   LIMNOLOGY AND OCEANOGRAPHY

Induction of domoic acid production in the toxic diatom Pseudo-nitzschia seriata by calanoid copepods

(2015) Anna Tammilehto et al.   AQUATIC TOXICOLOGY

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs

(2015) F. Musacchia et al.   BIOINFORMATICS

The diatom molecular toolkit to handle nitrogen uptake

(2015) Alessandra Rogato et al.   Marine Genomics

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Oil Accumulation by the Oleaginous DiatomFistulifera solarisas Revealed by the Genome and Transcriptome

(2015) Tsuyoshi Tanaka et al.   PLANT CELL

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

(2015) Ansgar Gruber et al.   PLANT JOURNAL

Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms

(2015) Valeria Di Dato et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Membrane Glycerolipid Remodeling Triggered by Nitrogen and Phosphorus Starvation inPhaeodactylum tricornutum

(2014) Heni Abida et al.   PLANT PHYSIOLOGY

Molecular regulation of the diatom cell cycle

(2013) Marie J.J. Huysman et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

Grazer-induced toxin formation in dinoflagellates: a transcriptomic model study

(2011) Ines Yang et al.   EUROPEAN JOURNAL OF PHYCOLOGY

PLASTICITY OF OXYLIPIN METABOLISM AMONG CLONES OF THE MARINE DIATOM SKELETONEMA MARINOI (BACILLARIOPHYCEAE)1

(2011) Andrea Gerecht et al.   JOURNAL OF PHYCOLOGY

Comparative metabolomics of the diatom Skeletonema marinoi in different growth phases

(2011) Charles Vidoudez et al.   Metabolomics

Grazer cues induce stealth behavior in marine dinoflagellates

(2011) E. Selander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The tubby family proteins

(2011) Saikat Mukhopadhyay et al.   GENOME BIOLOGY

Insights into Chemistry of Biological Materials: Newly Discovered Silica-Aragonite-Chitin Biocomposites in Demosponges

(2010) Hermann Ehrlich et al.   CHEMISTRY OF MATERIALS

Genetic heterogeneity and physiological variation among seasonally separated clones ofSkeletonema marinoi(Bacillariophyceae) in the Gullmar Fjord, Sweden

(2010) Vasudevan Saravanan et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling

(2010) Marie JJ Huysman et al.   GENOME BIOLOGY

Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

(2009) Florian Maumus et al.   BMC GENOMICS

Toxigenic effects of diatoms on grazers, phytoplankton and other microbes: a review

(2009) Adrianna Ianora et al.   ECOTOXICOLOGY

Growth phase of the diatom Skeletonema marinoi influences the metabolic profile of the cells and the selective feeding of the copepod Calanus spp.

(2009) A. Barofsky et al.   JOURNAL OF PLANKTON RESEARCH

Contribution of multi-nuclear solid state NMR to the characterization of the Thalassiosira pseudonana diatom cell wall

(2008) Benoit Tesson et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

A Diatom Gene Regulating Nitric-Oxide Signaling and Susceptibility to Diatom-Derived Aldehydes

(2008) Assaf Vardi et al.   CURRENT BIOLOGY

Induction of toxin production in dinoflagellates: the grazer makes a difference

(2008) Johanna Bergkvist et al.   OECOLOGIA

Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses

(2008) T. Mock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA