The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungusPostia placenta

(2016) Jiwei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How many DNA markers are needed to reveal cryptic fungal species?

(2015) Sudhagar V. Balasundaram et al.   Fungal Biology

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii

(2015) Dimitrios Floudas et al.   FUNGAL GENETICS AND BIOLOGY

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

(2015) Magnus Karlsson et al.   Genome Biology and Evolution

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Systematic Identification and Evolutionary Analysis of Catalytically Versatile Cytochrome P450 Monooxygenase Families Enriched in Model Basidiomycete Fungi

(2014) Khajamohiddin Syed et al.   PLoS One

Comparative Analysis of P450 Signature Motifs EXXR and CXG in the Large and Diverse Kingdom of Fungi: Identification of Evolutionarily Conserved Amino Acid Patterns Characteristic of P450 Family

(2014) Khajamohiddin Syed et al.   PLoS One

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

(2014) Chiaki Hori et al.   PLoS Genetics

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

Molecular Characterization of Sexual Diversity in a Population of Serpula lacrymans , a Tetrapolar Basidiomycete

(2013) Inger Skrede et al.   G3-Genes Genomes Genetics

P450 monooxygenases (P450ome) of the model white rot fungusPhanerochaete chrysosporium

(2012) Khajamohiddin Syed et al.   CRITICAL REVIEWS IN MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Evolutionary origin, worldwide dispersal, and population genetics of the dry rot fungus Serpula lacrymans

(2012) Håvard Kauserud et al.   Fungal Biology Reviews

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode

(2011) Inger Skrede et al.   BMC EVOLUTIONARY BIOLOGY

ABC proteins in yeast and fungal pathogens

(2011) Cornelia Klein et al.   Essays in Biochemistry

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

(2011) E. H. Stukenbrock et al.   GENOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Actin organization and dynamics in filamentous fungi

(2011) Adokiye Berepiki et al.   NATURE REVIEWS MICROBIOLOGY

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

(2011) D. C. Eastwood et al.   SCIENCE

Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships

(2010) Kathryn E Bushley et al.   BMC EVOLUTIONARY BIOLOGY

Multiple cryptic species with divergent substrate affinities in the Serpula himantioides species complex

(2010) Tor Carlsen et al.   Fungal Biology

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

(2010) W. Fletcher et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals

(2008) NIKLAUS J. GRÜNWALD et al.   MOLECULAR PLANT PATHOLOGY