Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer

Objective: This study aimed at finding the long non-coding RNA (IncRNA), miRNA and mRNA which played critical roles in breast cancer (BrCa) by using mixOmics R package. Method: The BrCa dataset were obtained from TCGA and then analyzed using DESeq2 R package. Multivariate analyses were performed with the mixOmics R package and the first component of the stacked partial leastSquares discriminant analysis results were used for searching the interested IncRNA, miRNA and mRNA. qRTPCR was applied to identify the bioinformatics results in four BrCa cell lines (MCF7, BT-20, ZR-75-1, and MX-1) and the breast epithelial cell line MCF-10 A. Then cells (MCF-1 and MX-1) were transfected with si-linc01561, miR-145-5p mimics and si-MMP11 to further investigate the effects of linc01561, miR-145-5p and MMP11 on the BrCa cells proliferation and apoptosis. Results: MixOmics results showed that linc01561, miR-145-5p and MMP11 might play important roles in BrCa. qRT-PCR results identified that in BrCa cell lines, linc01561 and MMP11 were higher expressed while miR-1455p was lower expressed compared with those in epithelial cell line. The linc01561 inhibition elevated miR-1455p expression and then suppressed MMP11 expression. Moreover, linc01561 inhibition suppressed the BrCa cells proliferation and promoted the apoptosis, which was realized by up-regulating expression of miR-145-5p and down-regulating expression of MMP11. Conclusion: In summary, the findings of this study, based on ceRNA theory, combining the research foundation of miR-145-5p and MMP11, and taking linc01561 as a new study point, provide new insight into molecular-level reversing proliferation and apoptosis of BrCa.