An efficient and accurate method for robust inter-dataset brain extraction and comparisons with 9 other methods

An open, multi-vendor, multi-field-strength brain MR dataset and analysis of publicly available skull stripping methods agreement

(2018) Roberto Souza et al.   NEUROIMAGE

Robust skull stripping using multiple MR image contrasts insensitive to pathology

(2017) Snehashis Roy et al.   NEUROIMAGE

A comparison of accurate automatic hippocampal segmentation methods

(2017) Azar Zandifar et al.   NEUROIMAGE

The preprocessed connectomes project repository of manually corrected skull-stripped T1-weighted anatomical MRI data

(2016) Benjamin Puccio et al.   GigaScience

Robust Machine Learning-Based Correction on Automatic Segmentation of the Cerebellum and Brainstem

(2016) Jun Yi Wang et al.   PLoS One

Accurate Learning with Few Atlases (ALFA): an algorithm for MRI neonatal brain extraction and comparison with 11 publicly available methods

(2016) Ahmed Serag et al.   Scientific Reports

Discriminative dictionary learning for abdominal multi-organ segmentation

(2015) Tong Tong et al.   MEDICAL IMAGE ANALYSIS

Brain Extraction Using Label Propagation and Group Agreement: Pincram

(2015) Rolf A. Heckemann et al.   PLoS One

Brain extraction based on locally linear representation-based classification

(2014) Meiyan Huang et al.   NEUROIMAGE

Optimized Brain Extraction for Pathological Brains (optiBET)

(2014) Evan S. Lutkenhoff et al.   PLoS One

Multi-Atlas Skull-Stripping

(2013) Jimit Doshi et al.   ACADEMIC RADIOLOGY

Segmentation of MR images via discriminative dictionary learning and sparse coding: Application to hippocampus labeling

(2013) Tong Tong et al.   NEUROIMAGE

Multi-atlas segmentation with joint label fusion and corrective learning—an open source implementation

(2013) Hongzhi Wang et al.   Frontiers in Neuroinformatics

LABEL: Pediatric brain extraction using learning-based meta-algorithm

(2012) Feng Shi et al.   NEUROIMAGE

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods

(2011) J. E. Iglesias et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A Supervised Patch-Based Approach for Human Brain Labeling

(2011) Françcois Rousseau et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation

(2011) Hongzhi Wang et al.   NEUROIMAGE

Brain MAPS: An automated, accurate and robust brain extraction technique using a template library

(2011) Kelvin K. Leung et al.   NEUROIMAGE

Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis

(2011) Aaron Carass et al.   NEUROIMAGE

BEaST: Brain extraction based on nonlocal segmentation technique

(2011) Simon F. Eskildsen et al.   NEUROIMAGE

FSL

(2011) Mark Jenkinson et al.   NEUROIMAGE

An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data

(2011) Brian B. Avants et al.   NEUROINFORMATICS

Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion

(2010) D. Louis Collins et al.   NEUROIMAGE

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation

(2010) Pierrick Coupé et al.   NEUROIMAGE

Unbiased average age-appropriate atlases for pediatric studies

(2010) Vladimir Fonov et al.   NEUROIMAGE

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Adaptive non-local means denoising of MR images with spatially varying noise levels

(2009) José V. Manjón et al.   JOURNAL OF MAGNETIC RESONANCE IMAGING

Enhanced brain extraction improves the accuracy of brain atrophy estimation

(2008) Marco Battaglini et al.   NEUROIMAGE

Brain morphometry with multiecho MPRAGE

(2008) André J.W. van der Kouwe et al.   NEUROIMAGE

Online resource for validation of brain segmentation methods

(2008) David W. Shattuck et al.   NEUROIMAGE

Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils

(2007) Richard G. Boyes et al.   NEUROIMAGE