Microbial diversity and biomarker analysis of modern freshwater microbialites from Laguna Bacalar, Mexico

Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes

(2017) Hon Lun Wong et al.   Scientific Reports

DNA extraction from benthic Cyanobacteria: comparative assessment and optimization

(2016) V. Gaget et al.   JOURNAL OF APPLIED MICROBIOLOGY

Rapid emergence of life shown by discovery of 3,700-million-year-old microbial structures

(2016) Allen P. Nutman et al.   NATURE

Thermodynamic and Kinetic Response of Microbial Reactions to High CO2

(2016) Qusheng Jin et al.   Frontiers in Microbiology

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community

(2016) Richard Allen White et al.   Frontiers in Microbiology

Fractionation of Hydrogen Isotopes by Sulfate- and Nitrate-Reducing Bacteria

(2016) Magdalena R. Osburn et al.   Frontiers in Microbiology

Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics

(2015) Rendy Ruvindy et al.   ISME Journal

Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats

(2015) Hon Lun Wong et al.   Scientific Reports

Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling

(2015) J. M. Mobberley et al.   Scientific Reports

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

Stromatolitic knobs in Storr's Lake (San Salvador, Bahamas): a model system for formation and alteration of laminae

(2015) C. Dupraz et al.   Geobiology

Characterizing microbial communities and processes in a modern stromatolite (Shark Bay) using lipid biomarkers and two-dimensional distributions of porewater solutes

(2014) Anais Pagès et al.   ENVIRONMENTAL MICROBIOLOGY

Prokaryote populations of extant microbialites along a depth gradient in Pavilion Lake, British Columbia, Canada

(2014) J. A. Russell et al.   Geobiology

TEXTURAL AND GEOCHEMICAL FEATURES OF FRESHWATER MICROBIALITES FROM LAGUNA BACALAR, QUINTANA ROO, MEXICO

(2014) S. I. CASTRO-CONTRERAS et al.   PALAIOS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Autotrophic and heterotrophic associated biosignatures in modern freshwater microbialites over seasonal and spatial gradients

(2013) Allyson L. Brady et al.   ORGANIC GEOCHEMISTRY

Spatially Resolved Genomic, Stable Isotopic, and Lipid Analyses of a Modern Freshwater Microbialite from Cuatro Ciénegas, Mexico

(2012) Anthony Nitti et al.   ASTROBIOLOGY

Cyanobacterial construction of hot spring siliceous stromatolites in Yellowstone National Park

(2012) Charles Pepe-Ranney et al.   ENVIRONMENTAL MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Existence and implications of hop-17(21)-enes in the lower Cretaceous of the Saihantala Sag, Erlian Basin, China

(2012) Qingyong Luo et al.   Petroleum Science

Hydrochemistry and microbialites of the alkaline crater lake Alchichica, Mexico

(2011) Józef Kaźmierczak et al.   FACIES

The biosynthesis of cyanobacterial sunscreen scytonemin in intertidal microbial mat communities

(2011) Emily P. Balskus et al.   FEMS MICROBIOLOGY ECOLOGY

Petroleum degradation and associated microbial signatures at the Chapopote asphalt volcano, Southern Gulf of Mexico

(2011) Florence Schubotz et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Hydrogen-isotopic variability in fatty acids from Yellowstone National Park hot spring microbial communities

(2011) Magdalena R. Osburn et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Review: The Yucatán Peninsula karst aquifer, Mexico

(2011) Peter Bauer-Gottwein et al.   HYDROGEOLOGY JOURNAL

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

(2010) Fabiola M Carvalho et al.   BMC MICROBIOLOGY

Photosynthetic isotope biosignatures in laminated micro-stromatolitic and non-laminated nodules associated with modern, freshwater microbialites in Pavilion Lake, B.C.

(2010) A.L. Brady et al.   CHEMICAL GEOLOGY

Aquatic ecosystems of the Yucatán Peninsula (Mexico), Belize, and Guatemala

(2010) Liseth Pérez et al.   HYDROBIOLOGIA

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Lipid biomarkers in Hamelin Pool microbial mats and stromatolites

(2010) Michelle A. Allen et al.   ORGANIC GEOCHEMISTRY

Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes

(2010) P. V. Welander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Groundwater geochemistry of the Yucatan Peninsula, Mexico: Constraints on stratigraphy and hydrogeology

(2009) Eugene Perry et al.   JOURNAL OF HYDROLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Processes of carbonate precipitation in modern microbial mats

(2008) Christophe Dupraz et al.   EARTH-SCIENCE REVIEWS

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

(2008) Mya Breitbart et al.   ENVIRONMENTAL MICROBIOLOGY

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

(2008) Falicia Goh et al.   ISME Journal

Reassessing the first appearance of eukaryotes and cyanobacteria

(2008) Birger Rasmussen et al.   NATURE

Lipid biomarker analysis of cyanobacteria-dominated microbial mats in meltwater ponds on the McMurdo Ice Shelf, Antarctica

(2008) Anne D. Jungblut et al.   ORGANIC GEOCHEMISTRY

Giant Holocene Freshwater Microbialites, Laguna Bacalar, Quintana Roo, Mexico

(2008) EBERHARD GISCHLER et al.   SEDIMENTOLOGY

Attached and suspended microbial communities in a pristine confined aquifer

(2008) Theodore M. Flynn et al.   WATER RESOURCES RESEARCH

Microbial biomass: A catalyst for CaCO3 precipitation in advection-dominated transport regimes

(2007) M. T. Kandianis et al.   GEOLOGICAL SOCIETY OF AMERICA BULLETIN