Deconstruction of a plant-arthropod community reveals influential plant traits with nonlinear effects on arthropod assemblages

Vertical stratification of the foliar fungal community in the world’s tallest trees

(2016) Joshua G. Harrison et al.   AMERICAN JOURNAL OF BOTANY

Do little interactions get lost in dark random forests?

(2016) Marvin N. Wright et al.   BMC BIOINFORMATICS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

(2016) Vinita Deshpande et al.   MYCOLOGIA

Phytochemical diversity and synergistic effects on herbivores

(2016) Lora A. Richards et al.   PHYTOCHEMISTRY REVIEWS

The Many Dimensions of Diet Breadth: Phytochemical, Genetic, Behavioral, and Physiological Perspectives on the Interaction between a Native Herbivore and an Exotic Host

(2016) Joshua G. Harrison et al.   PLoS One

Extending the Concept of Diversity Partitioning to Characterize Phenotypic Complexity

(2015) Zachary H. Marion et al.   AMERICAN NATURALIST

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Genetics-based interactions among plants, pathogens, and herbivores define arthropod community structure

(2015) Posy E. Busby et al.   ECOLOGY

Multiple plant traits shape the genetic basis of herbivore community assembly

(2015) Matthew A. Barbour et al.   FUNCTIONAL ECOLOGY

Relative Mass Defect Filtering of Mass Spectra: A Path to Discovery of Plant Specialized Metabolites

(2015) E.A. Prabodha Ekanayaka et al.   PLANT PHYSIOLOGY

Phytochemical diversity drives plant–insect community diversity

(2015) Lora A. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity Cascades in Alfalfa Fields: From Plant Quality to Agroecosystem Diversity

(2015) Clark V. Pearson et al.   ENVIRONMENTAL ENTOMOLOGY

Feature Selection with theBorutaPackage

(2015) Miron B. Kursa et al.   Journal of Statistical Software

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

metaMS: An open-source pipeline for GC–MS-based untargeted metabolomics

(2014) Ron Wehrens et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species interactions and a chain of indirect effects driven by reduced precipitation

(2013) Brandon T. Barton et al.   ECOLOGY

Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes

(2013) Carolina Bernhardsson et al.   ECOLOGY LETTERS

Effects of CO2 and Temperature on Tritrophic Interactions

(2013) Lee A. Dyer et al.   PLoS One

Predicting tropical insect herbivore abundance from host plant traits and phylogeny

(2012) Timothy J. S. Whitfeld et al.   ECOLOGY

Cross-kingdom interactions matter: fungal-mediated interactions structure an insect community on oak

(2012) Ayco J. M. Tack et al.   ECOLOGY LETTERS

GENOMIC REGIONS WITH A HISTORY OF DIVERGENT SELECTION AFFECT FITNESS OF HYBRIDS BETWEEN TWO BUTTERFLY SPECIES

(2012) Zachariah Gompert et al.   EVOLUTION

Mediation of a Plant-Spider Association by Specific Volatile Compounds

(2012) Ximena J. Nelson et al.   JOURNAL OF CHEMICAL ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.)

(2012) Kathryn M. Robinson et al.   PLoS One

The return of the variance: intraspecific variability in community ecology

(2012) Cyrille Violle et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Leaf quality, predators, and stochastic processes in the assembly of a diverse herbivore community

(2010) Nicholas A. Barber et al.   ECOLOGY

Plant traits that predict resistance to herbivores

(2010) Diego Carmona et al.   FUNCTIONAL ECOLOGY

Current trends in the evolutionary ecology of plant defence

(2010) Anurag A. Agrawal   FUNCTIONAL ECOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chemical diversity inBrassica oleraceaaffects biodiversity of insect herbivores

(2009) Erik H. Poelman et al.   ECOLOGY

Immunological cost of chemical defence and the evolution of herbivore diet breadth

(2009) Angela M. Smilanich et al.   ECOLOGY LETTERS

Anthropogenic Islands in the Arid West: Comparing the Richness and Diversity of Insect Communities in Cultivated Fields and Neighboring Wildlands

(2009) Matthew L. Forister   ENVIRONMENTAL ENTOMOLOGY

Heritability, covariation and natural selection on 24 traits of common evening primrose (Oenothera biennis) from a field experiment

(2009) M. T. J. JOHNSON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Size does matter: variation in herbivory between and within plants and the plant vigor hypothesis

(2008) Tatiana Cornelissen et al.   OIKOS

Direct and Indirect Effects of Resource Quality on Food Web Structure

(2008) T. Bukovinszky et al.   SCIENCE