Population assignment and local adaptation along an isolation-by-distance gradient in Pacific cod (Gadus macrocephalus )

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Modelling sensitivities to mixing and advection in a sill-basin estuarine system

(2017) Nancy Soontiens et al.   OCEAN MODELLING

Assessment of circulation and inter-basin transport in the Salish Sea including Johnstone Strait and Discovery Islands pathways

(2017) Tarang Khangaonkar et al.   OCEAN MODELLING

“Islands of Divergence” in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements

(2016) Marte Sodeland et al.   Genome Biology and Evolution

Annual plankton dynamics in a coupled physical–biological model of the Strait of Georgia, British Columbia

(2016) M. Angelica Peña et al.   PROGRESS IN OCEANOGRAPHY

Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod

(2016) Paul R. Berg et al.   Scientific Reports

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

(2015) Joseph Heras et al.   BMC GENOMICS

Where do we draw the line? A simulation approach for evaluating management of marine fish stocks with isolation-by-distance stock structure

(2015) Ingrid Spies et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

The utility of genetics in marine fisheries management: a simulation study based on Pacific cod off Alaska

(2015) Ingrid Spies et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Genetic isolation by distance reveals restricted dispersal across a range of life histories: implications for biodiversity conservation planning across highly variable marine environments

(2015) Daniel Wright et al.   DIVERSITY AND DISTRIBUTIONS

Microsatellite DNA analysis of Pacific hakeMerluccius productuspopulation structure in the Salish Sea

(2015) Eric M. Iwamoto et al.   ICES JOURNAL OF MARINE SCIENCE

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Restriction site-associated DNA sequencing, genotyping error estimation andde novoassembly optimization for population genetic inference

(2014) A. Mastretta-Yanes et al.   Molecular Ecology Resources

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Observations of Seasonal Movement from a Single Tag Release Group of Pacific Cod in the Eastern Bering Sea

(2014) Kimberly M. Rand et al.   Marine and Coastal Fisheries

Conserving marine biodiversity: insights from life-history trait candidate genes in Atlantic cod (Gadus morhua)

(2013) Jakob Hemmer-Hansen et al.   CONSERVATION GENETICS

Development and application of genomic tools to the restoration of green abalone in southern California

(2013) K. M. Gruenthal et al.   CONSERVATION GENETICS

Spawning phenology and geography of Aleutian Islands and eastern Bering Sea Pacific cod (Gadus macrocephalus)

(2013) Sandra K. Neidetcher et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Diel vertical migration of adult Pacific codGadus macrocephalusin Alaska

(2013) D. G. Nichol et al.   JOURNAL OF FISH BIOLOGY

Genomic divergence between the migratory and stationary ecotypes of Atlantic cod

(2013) Bård O. Karlsen et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

diveRsity: AnRpackage for the estimation and exploration of population genetics parameters and their associated errors

(2013) Kevin Keenan et al.   Methods in Ecology and Evolution

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

The trouble with isolation by distance

(2012) PATRICK G. MEIRMANS   MOLECULAR ECOLOGY

The Impact of Yangtze River Discharge, Ocean Currents and Historical Events on the Biogeographic Pattern of Cellana toreuma along the China Coast

(2012) Yun-wei Dong et al.   PLoS One

Frequent skipped spawning in the world's largest cod population

(2012) J. E. Skjaeraasen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Landscape Genetics Reveals Population Subdivision in Bering Sea and Aleutian Islands Pacific Cod

(2012) Ingrid Spies   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

(2012) Einar E. Nielsen et al.   Nature Communications

Skipped Spawning in Fishes: More Common than You Might Think

(2012) Rick M. Rideout et al.   Marine and Coastal Fisheries

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod,Gadus morhua

(2011) IAN R. BRADBURY et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Cod Gadus morhua and climate change: processes, productivity and prediction

(2010) K. M. Brander   JOURNAL OF FISH BIOLOGY

Multiple ice-age refugia in Pacific cod, Gadus macrocephalus

(2010) MICHAEL F. CANINO et al.   MOLECULAR ECOLOGY

Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod

(2010) H. KNUTSEN et al.   MOLECULAR ECOLOGY

Assessing the power of informative subsets of loci for population assignment: standard methods are upwardly biased

(2010) E. C. ANDERSON   Molecular Ecology Resources

Assessing population structure: FST and related measures

(2010) PATRICK G. MEIRMANS et al.   Molecular Ecology Resources

Population diversity and the portfolio effect in an exploited species

(2010) Daniel E. Schindler et al.   NATURE

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Genetic isolation by distance and localized fjord population structure in Pacific cod (Gadus macrocephalus): limited effective dispersal in the northeastern Pacific Ocean

(2009) Kathryn Maja Cunningham et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Chlorophyll distribution in a temperate estuary: The Strait of Georgia and Juan de Fuca Strait

(2009) Diane Masson et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

A descriptive analysis of temporal and spatial patterns of variability in Puget Sound oceanographic properties

(2008) Stephanie K. Moore et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Small-scale biocomplexity in coastal Atlantic cod supporting a Darwinian perspective on fisheries management

(2008) Esben Moland Olsen et al.   Evolutionary Applications

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Advances in molecular technology and their impact on fisheries genetics

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

ldne: a program for estimating effective population size from data on linkage disequilibrium

(2008) ROBIN S. WAPLES et al.   Molecular Ecology Resources

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources