Metabolomics-based chemotaxonomy of root endophytic fungi for natural products discovery

Genotypic diversity in root-endophytic fungi reflects efficient dispersal and environmental adaptation

(2017) Kyriaki Glynou et al.   MOLECULAR ECOLOGY

Facultative root-colonizing fungi dominate endophytic assemblages in roots of nonmycorrhizal Microthlaspi species

(2017) Kyriaki Glynou et al.   NEW PHYTOLOGIST

Strategies for dereplication of natural compounds using high-resolution tandem mass spectrometry

(2017) Tobias Kind et al.   Phytochemistry Letters

Isolating a functionally relevant guild of fungi from the root microbiome of Populus

(2016) Gregory Bonito et al.   Fungal Ecology

Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products

(2016) Yong Fuga Li et al.   FUNGAL GENETICS AND BIOLOGY

Influence of phylogenetic conservatism and trait convergence on the interactions between fungal root endophytes and plants

(2016) Sevda Haghi Kia et al.   ISME Journal

Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols

(2016) Max Crüsemann et al.   JOURNAL OF NATURAL PRODUCTS

A metabolomics guided exploration of marine natural product chemical space

(2016) Dimitrios J. Floros et al.   Metabolomics

Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)

(2016) Jana M. U’Ren et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

(2016) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

The local environment determines the assembly of root endophytic fungi at a continental scale

(2015) Kyriaki Glynou et al.   ENVIRONMENTAL MICROBIOLOGY

Evolution of Chemical Diversity in Echinocandin Lipopeptide Antifungal Metabolites

(2015) Qun Yue et al.   EUKARYOTIC CELL

Lenormandins A—G, new azaphilones from Hypoxylon lenormandii and Hypoxylon jaklitschii sp. nov., recognised by chemotaxonomic data

(2015) Eric Kuhnert et al.   FUNGAL DIVERSITY

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome

(2015) Robert A Quinn et al.   ISME Journal

Aspergillus mulundensis sp. nov., a new species for the fungus producing the antifungal echinocandin lipopeptides, mulundocandins

(2015) Gerald F Bills et al.   JOURNAL OF ANTIBIOTICS

The re-emergence of natural products for drug discovery in the genomics era

(2015) Alan L. Harvey et al.   NATURE REVIEWS DRUG DISCOVERY

Sesquiterpenes and other constituents of Xylaria sp. NC1214, a fungal endophyte of the moss Hypnum sp.

(2015) Han Wei et al.   PHYTOCHEMISTRY

Diversity of exophillic acid derivatives in strains of an endophytic Exophiala sp.

(2015) Zakaria Cheikh-Ali et al.   PHYTOCHEMISTRY

Front line defenders of the ecological niche! Screening the structural diversity of peptaibiotics from saprotrophic and fungicolous Trichoderma/Hypocrea species

(2014) Christian R. Röhrich et al.   FUNGAL DIVERSITY

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

(2014) Fionn Murtagh et al.   JOURNAL OF CLASSIFICATION

Competitive fragmentation modeling of ESI-MS/MS spectra for putative metabolite identification

(2014) Felicity Allen et al.   Metabolomics

Mass spectrometry of natural products: current, emerging and future technologies

(2014) Amina Bouslimani et al.   NATURAL PRODUCT REPORTS

A High-Resolution LC-MS-Based Secondary Metabolite Fingerprint Database of Marine Bacteria

(2014) Liang Lu et al.   Scientific Reports

The epichloae: alkaloid diversity and roles in symbiosis with grasses

(2013) Christopher L Schardl et al.   CURRENT OPINION IN PLANT BIOLOGY

High-Resolution MS, MS/MS, and UV Database of Fungal Secondary Metabolites as a Dereplication Protocol for Bioactive Natural Products

(2013) Tamam El-Elimat et al.   JOURNAL OF NATURAL PRODUCTS

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Bioactivity of Fungal Endophytes as a Function of Endophyte Taxonomy and the Taxonomy and Distribution of Their Host Plants

(2013) Sarah J. Higginbotham et al.   PLoS One

Chemical and Physical Modulation of Antibiotic Activity in Emericella Species

(2012) Mercedes de la Cruz et al.   CHEMISTRY & BIODIVERSITY

Chemical Ecology of Endophytic Fungi: Origins of Secondary Metabolites

(2012) Souvik Kusari et al.   CHEMISTRY & BIOLOGY

Diversity and composition of fungal endophytes in semiarid Northwest Venezuela

(2012) M. Loro et al.   JOURNAL OF ARID ENVIRONMENTS

Natural Products As Sources of New Drugs over the 30 Years from 1981 to 2010

(2012) David J. Newman et al.   JOURNAL OF NATURAL PRODUCTS

Fungal Assemblages Associated with Roots of Halophytic and Non-halophytic Plant Species Vary Differentially Along a Salinity Gradient

(2012) Jose G. Maciá-Vicente et al.   MICROBIAL ECOLOGY

A cross-platform toolkit for mass spectrometry and proteomics

(2012) Matthew C Chambers et al.   NATURE BIOTECHNOLOGY

The Dark Side Is Not Fastidious – Dark Septate Endophytic Fungi of Native and Invasive Plants of Semiarid Sandy Areas

(2012) Dániel G. Knapp et al.   PLoS One

The Fungi: 1, 2, 3 … 5.1 million species?

(2011) Meredith Blackwell   AMERICAN JOURNAL OF BOTANY

MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation

(2011) Laurent Gatto et al.   BIOINFORMATICS

Non-systemic fungal endophytes of grasses

(2011) Salud Sánchez Márquez et al.   Fungal Ecology

Labdane diterpenoids from Aframomum sceptrum: NMR study and antiparasitic activities

(2011) Zakaria Cheikh-Ali et al.   Phytochemistry Letters

Evaluation of Peak Picking Quality in LC−MS Metabolomics Data

(2010) Leonid Brodsky et al.   ANALYTICAL CHEMISTRY

Fungal endophytes from higher plants: a prolific source of phytochemicals and other bioactive natural products

(2010) Amal H. Aly et al.   FUNGAL DIVERSITY

Fungal secondary metabolites – Strategies to activate silent gene clusters

(2010) Axel A. Brakhage et al.   FUNGAL GENETICS AND BIOLOGY

The phylogenetic position of Rhopalostroma as inferred from a polythetic approach

(2010) M. Stadler et al.   PERSOONIA

Disruption of Signaling in a Fungal-Grass Symbiosis Leads to Pathogenesis

(2010) C. J. Eaton et al.   PLANT PHYSIOLOGY

What triggers grass endophytes to switch from mutualism to pathogenism?

(2010) Carla J. Eaton et al.   PLANT SCIENCE

Identity, Diversity, and Molecular Phylogeny of the Endophytic Mycobiota in the Roots of Rare Wild Rice (Oryza granulate) from a Nature Reserve in Yunnan, China

(2009) Z.-l. Yuan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Discovery of the parnafungins, antifungal metabolites that inhibit mRNA polyadenylation, from the Fusarium larvarum complex and other Hypocrealean fungi

(2009) Gerald F. Bills et al.   MYCOLOGIA

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Triggering cryptic natural product biosynthesis in microorganisms

(2009) Kirstin Scherlach et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Distribution of the antifungal agents sordarins across filamentous fungi

(2009) Francisca Vicente et al.  

Novel Root Fungal Consortium Associated with a Dominant Desert Grass

(2008) A. Porras-Alfaro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Leishmanicidal Metabolites from Cochliobolus sp., an Endophytic Fungus Isolated from Piptadenia adiantoides (Fabaceae)

(2008) Fernanda Fraga Campos et al.   PLoS Neglected Tropical Diseases

Clustering Millions of Tandem Mass Spectra

(2007) Ari M. Frank et al.   JOURNAL OF PROTEOME RESEARCH