Genetic structure and environmental niche modeling confirm two evolutionary and conservation units within the western spadefoot (Spea hammondii)

A fast likelihood solution to the genetic clustering problem

(2018) Marie-Pauline Beugin et al.   Methods in Ecology and Evolution

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

(2017) Huw A. Ogilvie et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus phylogeny of alligator lizards ( Elgaria , Anguidae): Testing mtDNA introgression as the source of discordant molecular phylogenetic hypotheses

(2017) Dean H. Leavitt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Use of molecular and environmental analyses for integrated in situ and ex situ conservation: The case of the Mexican prairie dog

(2016) Gabriela Castellanos-Morales et al.   BIOLOGICAL CONSERVATION

Integrating phylogeography and species distribution models: cryptic distributional responses to past climate change in an endemic rodent from the central Chile hotspot

(2016) Pablo Gutiérrez-Tapia et al.   DIVERSITY AND DISTRIBUTIONS

Genetically informed ecological niche models improve climate change predictions

(2016) Dana H. Ikeda et al.   GLOBAL CHANGE BIOLOGY

Negligible nuclear introgression despite complete mitochondrial capture between two species of chipmunks

(2015) Jeffrey M. Good et al.   EVOLUTION

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Anthropogenic warming has increased drought risk in California

(2015) Noah S. Diffenbaugh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Zoogeography of the San Andreas Fault system: Great Pacific Fracture Zones correspond with spatially concordant phylogeographic boundaries in western North America

(2014) Andrew D. Gottscho   BIOLOGICAL REVIEWS

Environmental filters reduce the effects of sampling bias and improve predictions of ecological niche models

(2014) Sara Varela et al.   ECOGRAPHY

Spatial filtering to reduce sampling bias can improve the performance of ecological niche models

(2014) Robert A. Boria et al.   ECOLOGICAL MODELLING

Cryptic Diversity in Metropolis: Confirmation of a New Leopard Frog Species (Anura: Ranidae) from New York City and Surrounding Atlantic Coast Regions

(2014) Jeremy A. Feinberg et al.   PLoS One

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

No evidence for nuclear introgression despite complete mtDNA replacement in the Carpathian newt (Lissotriton montandoni)

(2013) P. Zieliński et al.   MOLECULAR ECOLOGY

spads1.0: a toolbox to perform spatial analyses on DNA sequence data sets

(2013) Simon Dellicour et al.   Molecular Ecology Resources

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Species limits and integrated taxonomy of the Idaho ground squirrel (Urocitellus brunneus): genetic and ecological differentiation

(2012) Jessica L. Hoisington-Lopez et al.   JOURNAL OF MAMMALOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Early stages of divergence: phylogeography, climate modeling, and morphological differentiation in the South American lizardLiolaemus petrophilus(Squamata: Liolaemidae)

(2012) Frank M. Fontanella et al.   Ecology and Evolution

Combining genetic structure and ecological niche modeling to establish units of conservation: A case study of an imperiled salamander

(2011) Sarah E. May et al.   BIOLOGICAL CONSERVATION

Investigating niche and lineage diversification in widely distributed taxa: phylogeography and ecological niche modeling of thePeromyscus maniculatusspecies group

(2011) Håkon M. Kalkvik et al.   ECOGRAPHY

Hybridization, Mitochondrial DNA Phylogeography, and Prediction of the Early Stages of Reproductive Isolation: Lessons from New Zealand Cicadas (Genus Kikihia)

(2011) David C. Marshall et al.   SYSTEMATIC BIOLOGY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE INAPHELOCOMAJAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

(2009) John E. McCormack et al.   EVOLUTION

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle,Emys marmoratain California

(2009) PHILLIP Q. SPINKS et al.   MOLECULAR ECOLOGY

Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization

(2009) Phillip Q. Spinks et al.   SYSTEMATIC BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Widespread mito-nuclear discordance with evidence for introgressive hybridization and selective sweeps inLycaeides

(2008) ZACHARIAH GOMPERT et al.   MOLECULAR ECOLOGY