The cJUN NH2-terminal kinase (JNK) pathway contributes to mouse mammary gland remodeling during involution

Regulation of Mammary Luminal Cell Fate and Tumorigenesis by p38α

(2018) Ivan del Barco Barrantes et al.   Stem Cell Reports

JNK Promotes Epithelial Cell Anoikis by Transcriptional and Post-translational Regulation of BH3-Only Proteins

(2017) Nomeda Girnius et al.   Cell Reports

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Janus Kinase 1 Is Essential for Inflammatory Cytokine Signaling and Mammary Gland Remodeling

(2016) Kazuhito Sakamoto et al.   MOLECULAR AND CELLULAR BIOLOGY

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

(2015) Henry Heberle et al.   BMC BIOINFORMATICS

The BH3-only protein BIM contributes to late-stage involution in the mouse mammary gland

(2015) F Schuler et al.   CELL DEATH AND DIFFERENTIATION

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Stress signaling and the shaping of the mammary tissue in development and cancer

(2014) A Avivar-Valderas et al.   ONCOGENE

PAVIS: a tool for Peak Annotation and Visualization

(2013) Weichun Huang et al.   BIOINFORMATICS

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

(2013) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

JNK Expression by Macrophages Promotes Obesity-Induced Insulin Resistance and Inflammation

(2012) M. S. Han et al.   SCIENCE

Role of JNK in Mammary Gland Development and Breast Cancer

(2011) C. Cellurale et al.   CANCER RESEARCH

Stat3 controls lysosomal-mediated cell death in vivo

(2011) Peter A. Kreuzaler et al.   NATURE CELL BIOLOGY

TIMP3 Regulates Mammary Epithelial Apoptosis with Immune Cell Recruitment Through Differential TNF Dependence

(2011) Carlo V. Hojilla et al.   PLoS One

Mechanisms and functions of p38 MAPK signalling

(2010) Ana Cuadrado et al.   BIOCHEMICAL JOURNAL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Role of JNK in a Trp53-Dependent Mouse Model of Breast Cancer

(2010) Cristina Cellurale et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Functional Cooperation of the Proapoptotic Bcl2 Family Proteins Bmf and Bim In Vivo

(2009) A. Hubner et al.   MOLECULAR AND CELLULAR BIOLOGY

Multisite Phosphorylation Regulates Bim Stability and Apoptotic Activity

(2008) Anette Hübner et al.   MOLECULAR CELL

A Dual Role for Oncostatin M Signaling in the Differentiation and Death of Mammary Epithelial Cellsin Vivo

(2008) Paul G. Tiffen et al.   MOLECULAR ENDOCRINOLOGY