A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data
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Title
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data
Authors
Keywords
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Journal
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2018-03-22
DOI
10.1093/bib/bby023
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- (2017) Paul A. Northcott et al. NATURE
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- (2015) Po-Jung Huang et al. HUMAN MUTATION
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- Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer
- (2015) Anna Díez-Villanueva et al. Epigenetics & Chromatin
- The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations
- (2015) HoJoon Lee et al. Genome Medicine
- Identification of Gene Expression Pattern Related to Breast Cancer Survival Using Integrated TCGA Datasets and Genomic Tools
- (2015) Zhenzhen Huang et al. Biomed Research International
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- (2013) Cameron W. Brennan et al. CELL
- Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma
- (2013) Z. Kan et al. GENOME RESEARCH
- Genomics-Driven Oncology: Framework for an Emerging Paradigm
- (2013) Levi A. Garraway JOURNAL OF CLINICAL ONCOLOGY
- The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository
- (2013) Kenneth Clark et al. JOURNAL OF DIGITAL IMAGING
- Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data
- (2013) David A Gutman et al. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION
- The genomic landscape of hypodiploid acute lymphoblastic leukemia
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- IntOGen-mutations identifies cancer drivers across tumor types
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- (2013) Mehmet Kemal Samur et al. PLoS One
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