Counting motifs in dynamic networks

Identification of large disjoint motifs in biological networks

(2016) Rasha Elhesha et al.   BMC BIOINFORMATICS

Indexing a protein-protein interaction network expedites network alignment

(2015) Md Mahmudul Hasan et al.   BMC BIOINFORMATICS

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

(2015) Juan Carlos Rivera-Mulia et al.   GENOME RESEARCH

MODA: An efficient algorithm for network motif discovery in biological networks

(2010) Saeed Omidi et al.   GENES & GENETIC SYSTEMS

Kavosh: a new algorithm for finding network motifs

(2009) Zahra Kashani et al.   BMC BIOINFORMATICS

GraphCrunch: A tool for large network analyses

(2008) Tijana Milenković et al.   BMC BIOINFORMATICS

QNet: A Tool for Querying Protein Interaction Networks

(2008) Banu Dost et al.   JOURNAL OF COMPUTATIONAL BIOLOGY