Nanog induced intermediate state in regulating stem cell differentiation and reprogramming

Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond

(2016) Peijie Zhou et al.   JOURNAL OF CHEMICAL PHYSICS

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

(2015) Aleksandra A. Kolodziejczyk et al.   Cell Stem Cell

Branching and oscillations in the epigenetic landscape of cell-fate determination

(2015) Jomar Fajardo Rabajante et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Energy Landscape Reveals That the Budding Yeast Cell Cycle Is a Robust and Adaptive Multi-stage Process

(2015) Cheng Lv et al.   PLoS Computational Biology

An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States

(2015) Tian Hong et al.   PLoS Computational Biology

Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise

(2015) Cameron Sokolik et al.   Cell Systems

Nanog Is Dispensable for the Generation of Induced Pluripotent Stem Cells

(2014) Benjamin A. Schwarz et al.   CURRENT BIOLOGY

Genome-wide characterization of the routes to pluripotency

(2014) Samer M. I. Hussein et al.   NATURE

Deconstructing transcriptional heterogeneity in pluripotent stem cells

(2014) Roshan M. Kumar et al.   NATURE

Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model

(2013) Nicola Bonzanni et al.   BIOINFORMATICS

Coupled Reversible and Irreversible Bistable Switches Underlying TGFβ-induced Epithelial to Mesenchymal Transition

(2013) Xiao-Jun Tian et al.   BIOPHYSICAL JOURNAL

Induction of Pluripotency in Mouse Somatic Cells with Lineage Specifiers

(2013) Jian Shu et al.   CELL

MicroRNA-based regulation of epithelial-hybrid-mesenchymal fate determination

(2013) M. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time Scales in Epigenetic Dynamics and Phenotypic Heterogeneity of Embryonic Stem Cells

(2013) Masaki Sasai et al.   PLoS Computational Biology

Quantifying Cell Fate Decisions for Differentiation and Reprogramming of a Human Stem Cell Network: Landscape and Biological Paths

(2013) Chunhe Li et al.   PLoS Computational Biology

A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells

(2012) Jose M. Polo et al.   CELL

Landscapes of non-gradient dynamics without detailed balance: Stable limit cycles and multiple attractors

(2012) Hao Ge et al.   CHAOS

Quasi-potential landscape in complex multi-stable systems

(2012) J. X. Zhou et al.   Journal of the Royal Society Interface

Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain

(2012) Lei Zhang et al.   Molecular Systems Biology

Inferring rules of lineage commitment in haematopoiesis

(2012) Cristina Pina et al.   NATURE CELL BIOLOGY

Cellular Decision Making and Biological Noise: From Microbes to Mammals

(2011) Gábor Balázsi et al.   CELL

Gene expression heterogeneities in embryonic stem cell populations: origin and function

(2011) Alfonso Martinez Arias et al.   CURRENT OPINION IN CELL BIOLOGY

Oscillatory Protein Expression Dynamics Endows Stem Cells with Robust Differentiation Potential

(2011) Narito Suzuki et al.   PLoS One

Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells

(2011) Rui Chang et al.   PLoS Computational Biology

Mapping between dissipative and Hamiltonian systems

(2010) Jianhua Xing   Journal of Physics A-Mathematical and Theoretical

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Nanog Variability and Pluripotency Regulation of Embryonic Stem Cells - Insights from a Mathematical Model Analysis

(2010) Ingmar Glauche et al.   PLoS One

Nanog Is the Gateway to the Pluripotent Ground State

(2009) Jose Silva et al.   CELL

Direct cell reprogramming is a stochastic process amenable to acceleration

(2009) Jacob Hanna et al.   NATURE

Forcing cells to change lineages

(2009) Thomas Graf et al.   NATURE

Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells

(2009) Tibor Kalmar et al.   PLOS BIOLOGY

Capturing Pluripotency

(2008) Jose Silva et al.   CELL

Heterogeneity of Embryonic and Adult Stem Cells

(2008) Thomas Graf et al.   Cell Stem Cell

Dynamic Equilibrium and Heterogeneity of Mouse Pluripotent Stem Cells with Distinct Functional and Epigenetic States

(2008) Katsuhiko Hayashi et al.   Cell Stem Cell

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

(2008) Hannah H. Chang et al.   NATURE

Potential landscape and flux framework of nonequilibrium networks: Robustness, dissipation, and coherence of biochemical oscillations

(2008) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA