Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch)

Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach

(2016) Chao Gu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interference with ethylene perception at receptor level sheds light on auxin and transcriptional circuits associated with the climacteric ripening of apple fruit (Malus x domesticaBorkh.)

(2016) Alice Tadiello et al.   PLANT JOURNAL

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

PpYUC11, a strong candidate gene for the stony hard phenotype in peach (Prunus persicaL. Batsch), participates in IAA biosynthesis during fruit ripening

(2015) Lei Pan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Whole-Genome Analysis of Diversity and SNP-Major Gene Association in Peach Germplasm

(2015) Diego Micheletti et al.   PLoS One

Fruit softening and pectin disassembly: an overview of nanostructural pectin modifications assessed by atomic force microscopy

(2014) Candelas Paniagua et al.   ANNALS OF BOTANY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Role of plant hormones and their interplay in development and ripening of fleshy fruits

(2014) Rahul Kumar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increased levels of IAA are required for system 2 ethylene synthesis causing fruit softening in peach (Prunus persica L. Batsch)

(2013) Miho Tatsuki et al.   JOURNAL OF EXPERIMENTAL BOTANY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm

(2012) Ignazio Verde et al.   PLoS One

A comparative study of melting and non-melting flesh peach cultivars reveals that during fruit ripening endo-polygalacturonase (endo-PG) is mainly involved in pericarp textural changes, not in firmness reduction

(2011) A. Ghiani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Down-regulation of an Auxin Response Factor in the tomato induces modification of fine pectin structure and tissue architecture

(2008) F. Guillon et al.   JOURNAL OF EXPERIMENTAL BOTANY