Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes
Published 2018 View Full Article
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Title
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes
Authors
Keywords
Alternative polyadenylation, Cancer, 3’ UTR, Cleavage site, RNA-Seq, de novo assembly, Trans-ABySS, The Cancer Genome Atlas, Cloud computing
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-07-13
DOI
10.1186/s12864-018-4903-7
References
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Note: Only part of the references are listed.- Comparative analysis of alternative polyadenylation in S. cerevisiae and S. pombe
- (2017) Xiaochuan Liu et al. GENOME RESEARCH
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- (2017) Thomas Bonfert et al. PLoS One
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- (2016) A. E. Erson-Bensan et al. MOLECULAR CANCER RESEARCH
- The rules and impact of nonsense-mediated mRNA decay in human cancers
- (2016) Rik G H Lindeboom et al. NATURE GENETICS
- Alternative polyadenylation of mRNA precursors
- (2016) Bin Tian et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Processing and transcriptome expansion at the mRNA 3′ end in health and disease: finding the right end
- (2016) Anton Ogorodnikov et al. PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY
- Evolution and Biological Roles of Alternative 3′UTRs
- (2016) Christine Mayr TRENDS IN CELL BIOLOGY
- do_x3dna: a tool to analyze structural fluctuations of dsDNA or dsRNA from molecular dynamics simulations: Fig. 1.
- (2015) Rajendra Kumar et al. BIOINFORMATICS
- Genome-Wide Polyadenylation Maps Reveal Dynamic mRNA 3′-End Formation in the Failing Human HeartNovelty and Significance
- (2015) Esther E. Creemers et al. CIRCULATION RESEARCH
- Alternative 3′ UTRs act as scaffolds to regulate membrane protein localization
- (2015) Binyamin D. Berkovits et al. NATURE
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- (2015) Søren Lykke-Andersen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
- (2014) Justin Chu et al. BIOINFORMATICS
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer
- (2014) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3′-UTR landscape across seven tumour types
- (2014) Zheng Xia et al. Nature Communications
- Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
- (2013) S. Lianoglou et al. GENES & DEVELOPMENT
- 3' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts
- (2013) N. Spies et al. GENOME RESEARCH
- Alternative cleavage and polyadenylation: extent, regulation and function
- (2013) Ran Elkon et al. NATURE REVIEWS GENETICS
- Alternative cleavage and polyadenylation: the long and short of it
- (2013) Bin Tian et al. TRENDS IN BIOCHEMICAL SCIENCES
- Extensive alternative polyadenylation during zebrafish development
- (2012) I. Ulitsky et al. GENOME RESEARCH
- A quantitative atlas of polyadenylation in five mammals
- (2012) Adnan Derti et al. GENOME RESEARCH
- Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
- (2012) Mainul Hoque et al. NATURE METHODS
- The NumPy Array: A Structure for Efficient Numerical Computation
- (2011) Stéfan van der Walt et al. COMPUTING IN SCIENCE & ENGINEERING
- Mechanisms and Consequences of Alternative Polyadenylation
- (2011) Dafne Campigli Di Giammartino et al. MOLECULAR CELL
- Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
- (2011) P. J. Shepard et al. RNA
- Ruffus: a lightweight Python library for computational pipelines
- (2010) Leo Goodstadt BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Upf1 Senses 3′UTR Length to Potentiate mRNA Decay
- (2010) J. Robert Hogg et al. CELL
- De novo assembly and analysis of RNA-seq data
- (2010) Gordon Robertson et al. NATURE METHODS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
- (2009) Z. Ji et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
- (2008) R. Sandberg et al. SCIENCE
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