Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Highly conserved intragenic HSV-2 sequences: Results from next-generation sequencing of HSV-2 U L and U S regions from genital swabs collected from 3 continents

(2017) Christine Johnston et al.   VIROLOGY

Worldwide circulation of HSV-2 × HSV-1 recombinant strains

(2017) David M. Koelle et al.   Scientific Reports

Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study

(2017) Christine Johnston et al.   PLOS MEDICINE

Detection of Human Herpesvirus 6B (HHV-6B) Reactivation in Hematopoietic Cell Transplant Recipients with Inherited Chromosomally Integrated HHV-6A by Droplet Digital PCR

(2016) Ruth Hall Sedlak et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Clinical Utility of On-Demand Multiplex Respiratory Pathogen Testing among Adult Outpatients

(2016) Daniel A. Green et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multicenter Evaluation of BioFire FilmArray Meningitis/Encephalitis Panel for Detection of Bacteria, Viruses, and Yeast in Cerebrospinal Fluid Specimens

(2016) Amy L. Leber et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evaluation of the FilmArray Blood Culture Identification Panel: Results of a Multicenter Controlled Trial

(2016) Hossein Salimnia et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Efficient identification of inherited chromosomally integrated human herpesvirus 6 using specimen pooling

(2016) Joshua A. Hill et al.   JOURNAL OF CLINICAL VIROLOGY

The putative U94 integrase is dispensable for human herpesvirus 6 (HHV-6) chromosomal integration

(2016) Nina Wallaschek et al.   JOURNAL OF GENERAL VIROLOGY

Prospective Characterization of the Risk Factors for Transmission and Symptoms of Primary Human Herpesvirus Infections Among Ugandan Infants

(2016) Soren Gantt et al.   JOURNAL OF INFECTIOUS DISEASES

Identification of Viruses in Cases of Pediatric Acute Encephalitis and Encephalopathy Using Next-Generation Sequencing

(2016) Jun-ichi Kawada et al.   Scientific Reports

Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies

(2015) S. Seo et al.   BLOOD

Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology

(2015) Stephen J. Salipante et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2

(2015) Ruchi M. Newman et al.   JOURNAL OF VIROLOGY

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

(2015) Alexander L. Greninger et al.   Genome Medicine

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of Chromosomally Integrated Human Herpesvirus 6 by Droplet Digital PCR

(2014) R. H. Sedlak et al.   CLINICAL CHEMISTRY

Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

(2014) John H Morris et al.   Nature Protocols

Clinical impact of primary infection with roseoloviruses

(2014) Brenda L Tesini et al.   Current Opinion in Virology

KSHV 2.0: A Comprehensive Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Genome Using Next-Generation Sequencing Reveals Novel Genomic and Functional Features

(2014) Carolina Arias et al.   PLoS Pathogens

Classification of HHV-6A and HHV-6B as distinct viruses

(2013) Dharam Ablashi et al.   ARCHIVES OF VIROLOGY

Evolution and Diversity in Human Herpes Simplex Virus Genomes

(2013) M. L. Szpara et al.   JOURNAL OF VIROLOGY

Mapping the telomere integrated genome of human herpesvirus 6A and 6B

(2013) Jesse H. Arbuckle et al.   VIROLOGY

ACBD3 Interaction with TBC1 Domain 22 Protein Is Differentially Affected by Enteroviral and Kobuviral 3A Protein Binding

(2013) A. L. Greninger et al.   mBio

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

PtdIns4P synthesis by PI4KIIIα at the plasma membrane and its impact on plasma membrane identity

(2012) Fubito Nakatsu et al.   JOURNAL OF CELL BIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The 3A Protein from Multiple Picornaviruses Utilizes the Golgi Adaptor Protein ACBD3 To Recruit PI4KIII 

(2012) A. L. Greninger et al.   JOURNAL OF VIROLOGY

Decoding Human Cytomegalovirus

(2012) N. Stern-Ginossar et al.   SCIENCE

Virus Identification in Unknown Tropical Febrile Illness Cases Using Deep Sequencing

(2012) Nathan L. Yozwiak et al.   PLoS Neglected Tropical Diseases

Specific Capture and Whole-Genome Sequencing of Viruses from Clinical Samples

(2011) Daniel P. Depledge et al.   PLoS One

Extensive Genome-Wide Variability of Human Cytomegalovirus in Congenitally Infected Infants

(2011) Nicholas Renzette et al.   PLoS Pathogens

The latent human herpesvirus-6A genome specifically integrates in telomeres of human chromosomes in vivo and in vitro

(2010) J. H. Arbuckle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Frequency Spectrum Neutrality Tests: One for All and All for One

(2009) G. Achaz   GENETICS

In-depth Analysis of Tandem Mass Spectrometry Data from Disparate Instrument Types

(2008) Robert J. Chalkley et al.   MOLECULAR & CELLULAR PROTEOMICS