The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen

Heat stress affects vegetative and reproductive performance and trait correlations in tomato (Solanum lycopersicum)

(2017) Jiemeng Xu et al.   EUPHYTICA

Proteomics survey of Solanaceae family: Current status and challenges ahead

(2017) Arindam Ghatak et al.   Journal of Proteomics

Pollen Development at High Temperature: From Acclimation to Collapse

(2017) Ivo Rieu et al.   PLANT PHYSIOLOGY

Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination

(2016) Chao Liang et al.   BMC PLANT BIOLOGY

Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet)

(2016) Arindam Ghatak et al.   Journal of Proteomics

Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana

(2016) Gerit Bethke et al.   PLANT CELL

HsfA2 Controls the Activity of Developmentally and Stress-Regulated Heat Stress Protection Mechanisms in Tomato Male Reproductive Tissues

(2016) Sotirios Fragkostefanakis et al.   PLANT PHYSIOLOGY

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles

(2016) Oswaldo Valdés-López et al.   Frontiers in Plant Science

Rice Ribosomal Protein Large Subunit Genes and Their Spatio-temporal and Stress Regulation

(2016) Mazahar Moin et al.   Frontiers in Plant Science

Heat stress regimes for the investigation of pollen thermotolerance in crop plants

(2016) Anida Mesihovic et al.   Plant Reproduction

Translation initiation in plants: roles and implications beyond protein synthesis

(2015) S. Dutt et al.   BIOLOGIA PLANTARUM

Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses

(2015) Jin Zhang et al.   BMC GENOMICS

Identification of novel small ncRNAs in pollen of tomato

(2015) Kamila Lucia Bokszczanin et al.   BMC GENOMICS

Heat-Treatment-Responsive Proteins in Different Developmental Stages of Tomato Pollen Detected by Targeted Mass Accuracy Precursor Alignment (tMAPA)

(2015) Palak Chaturvedi et al.   JOURNAL OF PROTEOME RESEARCH

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

(2015) Elham Faghani et al.   Journal of Proteomics

Heat Shock Proteins: A Review of the Molecular Chaperones for Plant Immunity

(2015) Chang-Jin Park et al.   Plant Pathology Journal

A decade of pollen transcriptomics

(2015) Nicholas Rutley et al.   Plant Reproduction

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Multiple BiP Genes of Arabidopsis thaliana are Required for Male Gametogenesis and Pollen Competitiveness

(2014) Daisuke Maruyama et al.   PLANT AND CELL PHYSIOLOGY

Chaperone network composition inSolanum lycopersicumexplored by transcriptome profiling and microarray meta-analysis

(2014) SOTIRIOS FRAGKOSTEFANAKIS et al.   PLANT CELL AND ENVIRONMENT

Perspectives on deciphering mechanisms underlying plant heat stress response and thermotolerance

(2014) Kamila Bokszczanin   Frontiers in Plant Science

NextGenMap: fast and accurate read mapping in highly polymorphic genomes

(2013) Fritz J. Sedlazeck et al.   BIOINFORMATICS

Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition

(2013) Jinyan Wang et al.   BMC GENOMICS

Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease

(2013) Adam M Zawada et al.   Epigenetics

Cell-specific Analysis of the Tomato Pollen Proteome from Pollen Mother Cell to Mature Pollen Provides Evidence for Developmental Priming

(2013) Palak Chaturvedi et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive Cell-specific Protein Analysis in Early and Late Pollen Development from Diploid Microsporocytes to Pollen Tube Growth

(2013) Till Ischebeck et al.   MOLECULAR & CELLULAR PROTEOMICS

The impact of environmental stress on male reproductive development in plants: biological processes and molecular mechanisms

(2013) NICO DE STORME et al.   PLANT CELL AND ENVIRONMENT

RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing

(2013) A. E. Loraine et al.   PLANT PHYSIOLOGY

New Evidence for Differential Roles of L10 Ribosomal Proteins from Arabidopsis

(2013) M. L. Falcone Ferreyra et al.   PLANT PHYSIOLOGY

Analysis of Genome-Wide Changes in the Translatome of Arabidopsis Seedlings Subjected to Heat Stress

(2013) Emilio Yángüez et al.   PLoS One

Translation Initiation Factor AteIF(iso)4E Is Involved in Selective mRNA Translation in Arabidopsis Thaliana Seedlings

(2012) Ana Valeria Martínez-Silva et al.   PLoS One

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Transcriptional Regulation of Ribosome Components Are Determined by Stress According to Cellular Compartments in Arabidopsis thaliana

(2011) Rodnay Sormani et al.   PLoS One

Evolution of Plant Nucleotide-Sugar Interconversion Enzymes

(2011) Yanbin Yin et al.   PLoS One

Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa

(2010) Li Q Wei et al.   BMC GENOMICS

Histone variants and modifications in plant gene regulation

(2010) Roger B Deal et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis

(2010) Elke Mangelsen et al.   Molecular Plant

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl

(2010) A. Bombarely et al.   NUCLEIC ACIDS RESEARCH

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function

(2009) M. A. Grobei et al.   GENOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Separated Transcriptomes of Male Gametophyte and Tapetum in Rice: Validity of a Laser Microdissection (LM) Microarray

(2008) Keita Suwabe et al.   PLANT AND CELL PHYSIOLOGY