Distinctive characters of Nostoc genomes in cyanolichens

Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont

(2018) Denis Warshan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis

(2017) Denis Warshan et al.   ISME Journal

Assembly scaffolding with PE-contaminated mate-pair libraries

(2016) Kristoffer Sahlin et al.   BIOINFORMATICS

The genetics, biosynthesis and regulation of toxic specialized metabolites of cyanobacteria

(2016) Leanne A. Pearson et al.   HARMFUL ALGAE

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

A Genetic and Chemical Perspective on Symbiotic Recruitment of Cyanobacteria of the Genus Nostoc into the Host Plant Blasia pusilla L.

(2016) Anton Liaimer et al.   Frontiers in Microbiology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Nostopeptolide plays a governing role during cellular differentiation of the symbiotic cyanobacteriumNostoc punctiforme

(2015) Anton Liaimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Product Biosynthetic Diversity and Comparative Genomics of the Cyanobacteria

(2015) Elke Dittmann et al.   TRENDS IN MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

BESST - Efficient scaffolding of large fragmented assemblies

(2014) Kristoffer Sahlin et al.   BMC BIOINFORMATICS

Lichen-symbiotic cyanobacteria associated withPeltigerahave an alternative vanadium-dependent nitrogen fixation system

(2014) Brendan P. Hodkinson et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Genetic characterization of thehmplocus, a chemotaxis-like gene cluster that regulates hormogonium development and motility inNostoc punctiforme

(2014) Douglas D. Risser et al.   MOLECULAR MICROBIOLOGY

Type III restriction endonucleases are heterotrimeric: comprising one helicase–nuclease subunit and a dimeric methyltransferase that binds only one specific DNA

(2014) Annika Butterer et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Assessing population structure and host specialization in lichenized cyanobacteria

(2013) Heath E. O'Brien et al.   NEW PHYTOLOGIST

Molecular studies on cyanobacterial diversity in lichen symbioses

(2013) Jouko Rikkinen   MycoKeys

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

Ac/Ds-transposon activation tagging in poplar: a powerful tool for gene discovery

(2012) Matthias Fladung et al.   BMC GENOMICS

Opposing roles of σB and σB-controlled SpoVG in the global regulation of esxA in Staphylococcus aureus

(2012) Bettina Schulthess et al.   BMC MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Subscriptions

(2012)   NUCLEIC ACIDS RESEARCH

Accounting For Alignment Uncertainty in Phylogenomics

(2012) Martin Wu et al.   PLoS One

The PhyloPythiaS Web Server for Taxonomic Assignment of Metagenome Sequences

(2012) Kaustubh Raosaheb Patil et al.   PLoS One

Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio

(2011) Aaron S Adams et al.   ISME Journal

Membrane Anchoring of Aminoacyl-tRNA Synthetases by Convergent Acquisition of a Novel Protein Domain

(2011) Elvira Olmedo-Verd et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Statistical method on nonrandom clustering with application to somatic mutations in cancer

(2010) Jingjing Ye et al.   BMC BIOINFORMATICS

Cyanobacteria and ultraviolet radiation (UVR) stress: Mitigation strategies

(2009) Shailendra P. Singh et al.   AGEING RESEARCH REVIEWS

Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti

(2009) Lisa Klasson et al.   BMC GENOMICS

ASSESSING REPRODUCTIVE ISOLATION IN HIGHLY DIVERSE COMMUNITIES OF THE LICHEN-FORMING FUNGAL GENUSPELTIGERA

(2009) Heath E. O'Brien et al.   EVOLUTION

Genome Project Standards in a New Era of Sequencing

(2009) P. S. G. Chain et al.   SCIENCE

DNA Microarray Comparisons of Plant Factor- and Nitrogen Deprivation-Induced Hormogonia Reveal Decision-Making Transcriptional Regulation Patterns in Nostoc punctiforme

(2008) E. L. Campbell et al.   JOURNAL OF BACTERIOLOGY

Cyanobacteria-bryophyte symbioses

(2008) D. G. Adams et al.   JOURNAL OF EXPERIMENTAL BOTANY