Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Identification and analysis of ribosome-associated lncRNAs using ribosome profiling data
Authors
Keywords
Long noncoding RNA, Ribosome profiling, lncRNA, Ribosome-associated
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-05-29
DOI
10.1186/s12864-018-4765-z
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- lncRNAs are associated with polysomes during adipose-derived stem cell differentiation
- (2017) Bruno Dallagiovanna et al. GENE
- An atlas of human long non-coding RNAs with accurate 5′ ends
- (2017) Chung-Chau Hon et al. NATURE
- An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
- (2017) Volodimir Olexiouk et al. NUCLEIC ACIDS RESEARCH
- Bioinformatics tools for lncRNA research
- (2016) Junichi Iwakiri et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells
- (2016) Herah Hansji et al. Biology Direct
- Transcriptome-scale RNase-footprinting of RNA-protein complexes
- (2016) Zhe Ji et al. NATURE BIOTECHNOLOGY
- Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
- (2016) Joana Carlevaro-Fita et al. RNA
- Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways
- (2016) Martino Colombo et al. RNA
- Proteomics: High-protein research
- (2015) Neil Savage NATURE
- The landscape of long noncoding RNAs in the human transcriptome
- (2015) Matthew K Iyer et al. NATURE GENETICS
- A Long Noncoding RNA on the Ribosome Is Required for Lifespan Extension
- (2015) Paul B. Essers et al. Cell Reports
- Dom34 Rescues Ribosomes in 3′ Untranslated Regions
- (2014) Nicholas R. Guydosh et al. CELL
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes
- (2014) Søren Lykke-Andersen et al. GENES & DEVELOPMENT
- An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome
- (2014) Andreas Pircher et al. MOLECULAR CELL
- LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs
- (2014) Lina Ma et al. NUCLEIC ACIDS RESEARCH
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
- (2014) Julie L Aspden et al. eLife
- Long non-coding RNAs as a source of new peptides
- (2014) Jorge Ruiz-Orera et al. eLife
- EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
- (2013) Ning Leng et al. BIOINFORMATICS
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- The RNA Degradation Pathway Regulates the Function of GAS5 a Non-Coding RNA in Mammalian Cells
- (2013) Hidenori Tani et al. PLoS One
- Interrogating translational efficiency and lineage-specific transcriptomes using ribosome affinity purification
- (2013) P. Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A model based criterion for gene expression calls using RNA-seq data
- (2013) Günter P. Wagner et al. THEORY IN BIOSCIENCES
- Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
- (2012) Dennis K. Gascoigne et al. BIOINFORMATICS
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- RNA sequencing reveals two major classes of gene expression levels in metazoan cells
- (2011) D. Hebenstreit et al. Molecular Systems Biology
- Long noncoding RNAs: the search for function
- (2011) Monya Baker NATURE METHODS
- An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles
- (2009) Christine M. Clemson et al. MOLECULAR CELL
- Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
- (2009) Ahmad M. Khalil et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started