Integrated ovarian mRNA and miRNA transcriptome profiling characterizes the genetic basis of prolificacy traits in sheep (Ovis aries)

Analysis of genes that influence sheep follicular development by different nutrition levels during the luteal phase using expression profiling

(2016) F. Luo et al.   ANIMAL GENETICS

Identification and characterization of miRNAs in the ovaries of a highly prolific sheep breed

(2015) Xiaoju Hu et al.   ANIMAL GENETICS

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

(2014) Zhifu Sun et al.   BMC GENOMICS

Applications of Population Genetics to Animal Breeding, from Wright, Fisher and Lush to Genomic Prediction

(2014) William G. Hill   GENETICS

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

A missense mutation in growth differentiation factor 9 (GDF9) is strongly associated with litter size in sheep

(2013) Dag I Våge et al.   BMC GENETICS

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Genome-wide transcriptome analysis between Small-tail Han sheep and the Surabaya fur sheep using high-throughput RNA sequencing

(2013) Xiangyang Miao et al.   REPRODUCTION

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Silencing of a large microRNA cluster on human chromosome 14q32 in melanoma: biological effects of mir-376a and mir-376c on insulin growth factor 1 receptor

(2012) Liron Zehavi et al.   Molecular Cancer

Effect of feed flushing during summer season on growth, reproductive performance and blood metabolites in Malpura ewes under semiarid tropical environment

(2012) Syed Mohammad Khursheed Naqvi et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection

(2011) Agnes Bonnet et al.   BMC GENOMICS

The Human Mitochondrial Transcriptome

(2011) Tim R. Mercer et al.   CELL

Matrix extracellular phosphoglycoprotein is expressed in causative tumors of oncogenic osteomalacia

(2011) Yasuo Imanishi et al.   JOURNAL OF BONE AND MINERAL METABOLISM

Sclerostin is a locally acting regulator of late-osteoblast/preosteocyte differentiation and regulates mineralization through a MEPE-ASARM-dependent mechanism

(2011) Gerald J Atkins et al.   JOURNAL OF BONE AND MINERAL RESEARCH

The Effect of Matrix Extracellular Phosphoglycoprotein and Its Downstream Osteogenesis-related Gene Expression on the Proliferation and Differentiation of Human Dental Pulp Cells

(2011) Xi Wei et al.   JOURNAL OF ENDODONTICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Regulation of folliculogenesis and the determination of ovulation rate in ruminants

(2011) R. J. Scaramuzzi et al.   REPRODUCTION FERTILITY AND DEVELOPMENT

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

A review of the effects of the Booroola gene (FecB) on sheep production

(2009) N.M. Fogarty   SMALL RUMINANT RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A 17bp deletion in the Bone Morphogenetic Protein 15 (BMP15) gene is associated to increased prolificacy in the Rasa Aragonesa sheep breed

(2008) Luis V. Monteagudo et al.   ANIMAL REPRODUCTION SCIENCE

Colocalization of Cystatin M/E and its Target Proteases Suggests a Role in Terminal Differentiation of Human Hair Follicle and Nail

(2008) Tsing Cheng et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

Enhancement of Ovulatory Follicle Development in Maiden Sheep by Short-term Supplementation with Steam-flaked Corn

(2008) C Letelier et al.   REPRODUCTION IN DOMESTIC ANIMALS

Genetic Aspects of Reproduction in Sheep

(2008) DR Notter   REPRODUCTION IN DOMESTIC ANIMALS