Exploring the relationship between intron retention and chromatin accessibility in plants
Published 2018 View Full Article
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Title
Exploring the relationship between intron retention and chromatin accessibility in plants
Authors
Keywords
Intron retention, Chromatin accessibility, DNase I hypersensitive sites
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-01-05
DOI
10.1186/s12864-017-4393-z
References
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Note: Only part of the references are listed.- Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors
- (2017) Hong Han et al. MOLECULAR CELL
- Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II
- (2016) Fernando Carrillo Oesterreich et al. CELL
- Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
- (2016) Ronan C. O’Malley et al. CELL
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- (2016) Xutong Wang et al. Molecular Plant
- Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure
- (2015) Shiran Naftelberg et al. Annual Review of Biochemistry
- The alternative role of DNA methylation in splicing regulation
- (2015) Galit Lev Maor et al. TRENDS IN GENETICS
- Efficient Test and Visualization of Multi-Set Intersections
- (2015) Minghui Wang et al. Scientific Reports
- Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis
- (2015) Hui Liu et al. BMC GENOMICS
- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
- (2013) Assaf Zemach et al. CELL
- DNase I–hypersensitive exons colocalize with promoters and distal regulatory elements
- (2013) Tim R Mercer et al. NATURE GENETICS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Epigenetic features are significantly associated with alternative splicing
- (2012) Yuanpeng Zhou et al. BMC GENOMICS
- DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns
- (2012) Mélanie Rigal et al. EMBO JOURNAL
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis
- (2012) W. Zhang et al. PLANT CELL
- Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing
- (2012) Irene S. Day et al. PLANT JOURNAL
- Transcriptome and methylome interactions in rice hybrids
- (2012) Ramakrishna K. Chodavarapu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
- (2012) Mark F Rogers et al. GENOME BIOLOGY
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- High-resolution mapping of open chromatin in the rice genome
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- Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
- (2011) Sam John et al. NATURE GENETICS
- Functional consequences of developmentally regulated alternative splicing
- (2011) Auinash Kalsotra et al. NATURE REVIEWS GENETICS
- Euchromatic Subdomains in Rice Centromeres Are Associated with Genes and Transcription
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- (2010) Adam Labadorf et al. BMC GENOMICS
- High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- (2010) A. P. Boyle et al. GENOME RESEARCH
- AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling
- (2010) Karl-Josef Dietz et al. PROTOPLASMA
- Regulation of Alternative Splicing by Histone Modifications
- (2010) R. F. Luco et al. SCIENCE
- Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
- (2009) Jay R Hesselberth et al. NATURE METHODS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
- (2008) Z. Wang et al. RNA
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