Contemporary ancestor? Adaptive divergence from standing genetic variation in Pacific marine threespine stickleback

Population genetic structure and demographic history of the spadefish, Chaetodipterus faber (Ephippidae) from Southwestern Atlantic

(2017) Leonardo Francisco Machado et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Exploring Jordan's rule in Pacific three-spined stickleback Gasterosteus aculeatus

(2017) M. R. J. Morris et al.   JOURNAL OF FISH BIOLOGY

Eda haplotypes in three-spined stickleback are associated with variation in immune gene expression

(2017) Shaun Robertson et al.   Scientific Reports

Genetic basis for body size variation between an anadromous and two derived lacustrine populations of threespine sticklebackGasterosteus aculeatusin southwest Alaska

(2016) Ella Bowles et al.   Current Zoology

Geographic extent of introgression inSebastes mentellaand its effect on genetic population structure

(2016) Atal Saha et al.   Evolutionary Applications

Evolution of Schooling Behavior in Threespine Sticklebacks Is Shaped by the Eda Gene

(2016) Anna K. Greenwood et al.   GENETICS

Fish, genes and genomes: contributions to ecology, evolution and management

(2016) G. R. Carvalho et al.   JOURNAL OF FISH BIOLOGY

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

(2016) L. Bernatchez   JOURNAL OF FISH BIOLOGY

Adaptive genomic divergence under high gene flow between freshwater and brackish-water ecotypes of prickly sculpin (Cottus asper) revealed by Pool-Seq

(2016) Stefan Dennenmoser et al.   MOLECULAR ECOLOGY

The ecology of an adaptive radiation of three-spined stickleback from North Uist, Scotland

(2016) Isabel S. Magalhaes et al.   MOLECULAR ECOLOGY

The genetic and molecular architecture of phenotypic diversity in sticklebacks

(2016) Catherine L. Peichel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic basis for body size variation between an anadromous and two derived lacustrine populations of threespine sticklebackGasterosteus aculeatusin southwest Alaska

(2016) Ella Bowles et al.   Current Zoology

Evolution of Schooling Behavior in Threespine Sticklebacks Is Shaped by the Eda Gene

(2016) Anna K. Greenwood et al.   GENETICS

Population Genomics of Marine Fishes: Next-Generation Prospects and Challenges

(2016) Jakob Hemmer-Hansen et al.   BIOLOGICAL BULLETIN

Variation in Lateral Plate Quality in Threespine Stickleback from Fresh, Brackish and Marine Water: A Micro-Computed Tomography Study

(2016) Elisabeth Wiig et al.   PLoS One

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Eco-evo-devo in the Study of Adaptive Divergence: Examples from Threespine Stickleback (Gasterosteus aculeatus)

(2015) H. A. Jamniczky et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three-spine sticklebacks in divergent environments

(2015) Anne-Laure Ferchaud et al.   MOLECULAR ECOLOGY

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

Evolution of stickleback in 50 years on earthquake-uplifted islands

(2015) Emily A. Lescak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

Admixture of ancient mitochondrial lineages in three-spined stickleback populations from the North Pacific

(2014) Emily A. Lescak et al.   JOURNAL OF BIOGEOGRAPHY

Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback

(2014) Matthew R. J. Morris et al.   MOLECULAR ECOLOGY

SimRAD: an R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches

(2014) Olivier Lepais et al.   Molecular Ecology Resources

Pleiotropic effects of a single gene on skeletal development and sensory system patterning in sticklebacks

(2014) Margaret G Mills et al.   EvoDevo

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

HETEROGENEOUS GENOMIC DIFFERENTIATION IN MARINE THREESPINE STICKLEBACKS: ADAPTATION ALONG AN ENVIRONMENTAL GRADIENT

(2013) Jacquelin DeFaveri et al.   EVOLUTION

Key questions in the genetics and genomics of eco-evolutionary dynamics

(2013) A P Hendry   HEREDITY

Morphological change and phenotypic plasticity in native and non-native pumpkinseed sunfish in response to sustained water velocities

(2013) S. Yavno et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evidence for adaptive phenotypic differentiation in Baltic Sea sticklebacks

(2013) J. DeFaveri et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

High degree of genetic differentiation in marine three-spined sticklebacks (Gasterosteus aculeatus)

(2013) Jacquelin DeFaveri et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

(2013) James A. Cahill et al.   PLoS Genetics

GENETIC SIGNATURE OF ADAPTIVE PEAK SHIFT IN THREESPINE STICKLEBACK

(2012) Sean M. Rogers et al.   EVOLUTION

MULTIPLE EVOLUTIONARY PATHWAYS TO DECREASED LATERAL PLATE COVERAGE IN FRESHWATER THREESPINE STICKLEBACKS

(2012) Tuomas Leinonen et al.   EVOLUTION

EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE

(2012) Vera S. Domingues et al.   EVOLUTION

Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment

(2012) M. Ravinet et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

When Phenotypes Do Not Match Genotypes--Unexpected Phenotypic Diversity and Potential Environmental Constraints in Icelandic Stickleback

(2012) K. Lucek et al.   JOURNAL OF HEREDITY

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

(2012) PHILINE G. D. FEULNER et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

(2011) Felicity C. Jones et al.   CURRENT BIOLOGY

Directional genetic selection by pulp mill effluent on multiple natural populations of three-spined stickleback (Gasterosteus aculeatus)

(2011) Emma E. Lind et al.   ECOTOXICOLOGY

PARALLEL AND NONPARALLEL ASPECTS OF ECOLOGICAL, PHENOTYPIC, AND GENETIC DIVERGENCE ACROSS REPLICATE POPULATION PAIRS OF LAKE AND STREAM STICKLEBACK

(2011) Renaud Kaeuffer et al.   EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Adaptation in the age of ecological genomics: insights from parallelism and convergence

(2011) Kathryn R. Elmer et al.   TRENDS IN ECOLOGY & EVOLUTION

Ecological release in White Sands lizards

(2011) S. Des Roches et al.   Ecology and Evolution

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

An overview of life-history variation in female threespine stickleback

(2010) John Baker et al.   BEHAVIOUR

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Frequency of Ectodysplasin alleles and limited introgression between sympatric threespine stickleback populations

(2010) Michael A. Bell et al.   ENVIRONMENTAL BIOLOGY OF FISHES

GENE FLOW AND SELECTION ON PHENOTYPIC PLASTICITY IN AN ISLAND SYSTEM OF RANA TEMPORARIA

(2010) Martin I. Lind et al.   EVOLUTION

CRYPTIC GENETIC VARIATION AND BODY SIZE EVOLUTION IN THREESPINE STICKLEBACK

(2010) Katrina McGuigan et al.   EVOLUTION

Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod

(2010) H. KNUTSEN et al.   MOLECULAR ECOLOGY

MorphoJ: an integrated software package for geometric morphometrics

(2010) CHRISTIAN PETER KLINGENBERG   Molecular Ecology Resources

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Should I stay or should I go? The Ectodysplasin locus is associated with behavioural differences in threespine stickleback

(2009) R. D. H. Barrett et al.   Biology Letters

ENVIRONMENT SPECIFIC PLEIOTROPY FACILITATES DIVERGENCE AT THEECTODYSPLASINLOCUS IN THREESPINE STICKLEBACK

(2009) Rowan D. H. Barrett et al.   EVOLUTION

Testing for Spatially Divergent Selection: Comparing QST to FST

(2009) M. C. Whitlock et al.   GENETICS

The House mice of the Faroe Islands: a study in microdifferentiation

(2009) R. J. Berry et al.   JOURNAL OF ZOOLOGY

Genetics and ecological speciation

(2009) D. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Reverse Evolution of Armor Plates in the Threespine Stickleback

(2008) Jun Kitano et al.   CURRENT BIOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources

Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe—Evidence for multiple glacial refugia

(2007) H.S. Mäkinen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION