Antigenic cartography of H1N1 influenza viruses using sequence-based antigenic distance calculation

Standardization of Hemagglutination Inhibition Assay for Influenza Serology Allows for High Reproducibility between Laboratories

(2016) Mary Zacour et al.   Clinical and Vaccine Immunology

Directed selection of influenza virus produces antigenic variants that match circulating human virus isolates and escape from vaccine-mediated immune protection

(2016) Marta L. DeDiego et al.   IMMUNOLOGY

Novel Sequence-Based Mapping of Recently Emerging H5NX Influenza Viruses Reveals Pandemic Vaccine Candidates

(2016) Christopher S. Anderson et al.   PLoS One

Influenza evolution and H3N2 vaccine effectiveness, with application to the 2014/2015 season

(2016) Xi Li et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Incorporating structure context of HA protein to improve antigenicity calculation for influenza virus A/H3N2

(2016) Jingxuan Qiu et al.   Scientific Reports

Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans

(2015) Alexandra J. Lee et al.   JOURNAL OF VIROLOGY

Identification of Amino Acid Substitutions Supporting Antigenic Change of Influenza A(H1N1)pdm09 Viruses

(2015) Björn F. Koel et al.   JOURNAL OF VIROLOGY

Computational Identification of Antigenicity-Associated Sites in the Hemagglutinin Protein of A/H1N1 Seasonal Influenza Virus

(2015) Xiaowei Ren et al.   PLoS One

Immune history profoundly affects broadly protective B cell responses to influenza

(2015) Sarah F. Andrews et al.   Science Translational Medicine

Antigenic Patterns and Evolution of the Human Influenza A (H1N1) Virus

(2015) Mi Liu et al.   Scientific Reports

Substitutions near the Hemagglutinin Receptor-Binding Site Determine the Antigenic Evolution of Influenza A H3N2 Viruses in U.S. Swine

(2014) N. S. Lewis et al.   JOURNAL OF VIROLOGY

Low 2012–13 Influenza Vaccine Effectiveness Associated with Mutation in the Egg-Adapted H3N2 Vaccine Strain Not Antigenic Drift in Circulating Viruses

(2014) Danuta M. Skowronski et al.   PLoS One

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

B Cell Response and Hemagglutinin Stalk-Reactive Antibody Production in Different Age Cohorts following 2009 H1N1 Influenza Virus Vaccination

(2013) Mark Y. Sangster et al.   Clinical and Vaccine Immunology

Immune history shapes specificity of pandemic H1N1 influenza antibody responses

(2013) Yang Li et al.   JOURNAL OF EXPERIMENTAL MEDICINE

H3N2v and Other Influenza Epidemic Risk Based on Age-Specific Estimates of Sero-Protection and Contact Network Interactions

(2013) Danuta M. Skowronski et al.   PLoS One

Potential of a sequence-based antigenic distance measure to indicate equine influenza vaccine strain efficacy

(2013) Janet M. Daly et al.   VACCINE

Evidence for N-Glycan Shielding of Antigenic Sites during Evolution of Human Influenza A Virus Hemagglutinin

(2012) Y. Kobayashi et al.   JOURNAL OF VIROLOGY

Antigenic distance measurements for seasonal influenza vaccine selection

(2011) Zhipeng Cai et al.   VACCINE

A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2

(2010) William D. Lees et al.   BIOINFORMATICS

Immunity to Pre-1950 H1N1 Influenza Viruses Confers Cross-Protection against the Pandemic Swine-Origin 2009 A (H1N1) Influenza Virus

(2010) I. Skountzou et al.   JOURNAL OF IMMUNOLOGY

Quantifying Antigenic Relationships among the Lyssaviruses

(2010) D. L. Horton et al.   JOURNAL OF VIROLOGY

Viral Mutation Rates

(2010) R. Sanjuan et al.   JOURNAL OF VIROLOGY

A novel sequence-based antigenic distance measure for H1N1, with application to vaccine effectiveness and the selection of vaccine strains

(2010) K. Pan et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Co-evolution positions and rules for antigenic variants of human influenza A/H3N2 viruses

(2009) Jhang-Wei Huang et al.   BMC BIOINFORMATICS

Simulation and Prediction of the Adaptive Immune Response to Influenza A Virus Infection

(2009) H. Y. Lee et al.   JOURNAL OF VIROLOGY

Cross-Reactive Antibody Responses to the 2009 Pandemic H1N1 Influenza Virus

(2009) Kathy Hancock et al.   NEW ENGLAND JOURNAL OF MEDICINE

Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans

(2009) R. J. Garten et al.   SCIENCE

Hemagglutinin Receptor Binding Avidity Drives Influenza A Virus Antigenic Drift

(2009) S. E. Hensley et al.   SCIENCE

Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus

(2008) Yu-Chieh Liao et al.   BIOINFORMATICS

Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

(2008) Colin A. Russell et al.   VACCINE