BCDForest: a boosting cascade deep forest model towards the classification of cancer subtypes based on gene expression data

A novel method to measure the semantic similarity of HPO terms

(2017) Jiajie Peng et al.   International Journal of Data Mining and Bioinformatics

Identifying consistent disease subnetworks using DNet

(2017) Jiajie Peng et al.   METHODS

DisSetSim: an online system for calculating similarity between disease sets

(2017) Yang Hu et al.   Journal of Biomedical Semantics

Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis

(2016) Geert Litjens et al.   Scientific Reports

MicroRNA signatures highlight new breast cancer subtypes

(2015) Malay Bhattacharyya et al.   GENE

Integrative Data Analysis of Multi-Platform Cancer Data with a Multimodal Deep Learning Approach

(2015) Muxuan Liang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Efficient molecular subtype classification of high-grade serous ovarian cancer

(2015) Huei San Leong et al.   JOURNAL OF PATHOLOGY

MicroRNA–mRNA interactions underlying colorectal cancer molecular subtypes

(2015) Laura Cantini et al.   Nature Communications

A personalized committee classification approach to improving prediction of breast cancer metastasis

(2014) Md Jamiul Jahid et al.   BIOINFORMATICS

GLAD: a mixed-membership model for heterogeneous tumor subtype classification

(2014) Hachem Saddiki et al.   BIOINFORMATICS

An insight into classification with imbalanced data: Empirical results and current trends on using data intrinsic characteristics

(2013) Victoria López et al.   INFORMATION SCIENCES

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

Gene Expression Classification of Colon Cancer into Molecular Subtypes: Characterization, Validation, and Prognostic Value

(2013) Laetitia Marisa et al.   PLOS MEDICINE

Deep Neural Networks for Acoustic Modeling in Speech Recognition: The Shared Views of Four Research Groups

(2012) Geoffrey Hinton et al.   IEEE SIGNAL PROCESSING MAGAZINE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Tumor Classification Based on Non-Negative Matrix Factorization Using Gene Expression Data

(2011) Chun-Hou Zheng et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Subtype and pathway specific responses to anticancer compounds in breast cancer

(2011) L. M. Heiser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prognostic and Therapeutic Implications of Distinct Kinase Expression Patterns in Different Subtypes of Breast Cancer

(2010) G. Bianchini et al.   CANCER RESEARCH

Out-of-bag estimation of the optimal sample size in bagging

(2009) Gonzalo Martínez-Muñoz et al.   PATTERN RECOGNITION

A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification

(2008) Alexander Statnikov et al.   BMC BIOINFORMATICS