BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways

OASIS: web-based platform for exploring cancer multi-omics data

(2016) Julio Fernandez-Banet et al.   NATURE METHODS

TCGA2STAT: simple TCGA data access for integrated statistical analysis in R

(2015) Ying-Wooi Wan et al.   BIOINFORMATICS

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Empowering biologists with multi-omics data: colorectal cancer as a paradigm

(2014) Jing Zhu et al.   BIOINFORMATICS

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions

(2012) Luiz A Bovolenta et al.   BMC GENOMICS

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Mutual exclusivity analysis identifies oncogenic network modules

(2011) G. Ciriello et al.   GENOME RESEARCH

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY