Using genomic analysis to identify tomato Tm-2 resistance-breaking mutations and their underlying evolutionary path in a new and emerging tobamovirus

Spicing Up theNGene: F. O. Holmes andTobacco mosaic virusResistance inCapsicumandNicotianaPlants

(2017) Karen-Beth G. Scholthof   PHYTOPATHOLOGY

Molecular and Biological Characterization of Tomato mottle mosaic virus and Development of RT-PCR Detection

(2017) Xuelian Sui et al.   PLANT DISEASE

A New Israeli Tobamovirus Isolate Infects Tomato Plants Harboring Tm-22 Resistance Genes

(2017) Neta Luria et al.   PLoS One

A new tobamovirus infecting tomato crops in Jordan

(2015) N. Salem et al.   ARCHIVES OF VIROLOGY

Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes

(2015) Frédéric Fabre et al.   Evolutionary Applications

A model for intracellular movement ofCauliflower mosaic virus: the concept of the mobile virion factory

(2015) James E. Schoelz et al.   JOURNAL OF EXPERIMENTAL BOTANY

JPred4: a protein secondary structure prediction server

(2015) Alexey Drozdetskiy et al.   NUCLEIC ACIDS RESEARCH

A Novel Route Controlling Begomovirus Resistance by the Messenger RNA Surveillance Factor Pelota

(2015) Moshe Lapidot et al.   PLoS Genetics

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

First Report of Tomato mottle mosaic virus Infection of Pepper in China

(2014) Y. Y. Li et al.   PLANT DISEASE

First Report of Cucumber green mottle mosaic virus on Melon in the United States

(2014) T. Tian et al.   PLANT DISEASE

Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1

(2014) K. Ishibashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Evolution and Genetics of Virus Host Shifts

(2014) Ben Longdon et al.   PLoS Pathogens

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

(2013) Tiina Särkinen et al.   BMC EVOLUTIONARY BIOLOGY

Identification of the domains of cauliflower mosaic virus protein P6 responsible for suppression of RNA silencing and salicylic acid signalling

(2013) J. Laird et al.   JOURNAL OF GENERAL VIROLOGY

The Tobacco mosaic virus Movement Protein Associates with but Does Not Integrate into Biological Membranes

(2013) A. Peiro et al.   JOURNAL OF VIROLOGY

The P6 protein of Cauliflower mosaic virus interacts with CHUP1, a plant protein which moves chloroplasts on actin microfilaments

(2013) Carlos A. Angel et al.   VIROLOGY

Crystal Structure of the Superfamily 1 Helicase from Tomato Mosaic Virus

(2012) M. Nishikiori et al.   JOURNAL OF VIROLOGY

Multiple Domains of the Tobacco mosaic virus p126 Protein Can Independently Suppress Local and Systemic RNA Silencing

(2012) Li-Ya Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Cauliflower mosaic virus Protein P6 Inhibits Signaling Responses to Salicylic Acid and Regulates Innate Immunity

(2012) Andrew J. Love et al.   PLoS One

Silencing and Innate Immunity in Plant Defense Against Viral and Non-Viral Pathogens

(2012) Anna Zvereva et al.   Viruses-Basel

Co-divergence and host-switching in the evolution of tobamoviruses

(2011) A. H. Stobbe et al.   JOURNAL OF GENERAL VIROLOGY

Identification of an amino acid residue required for differential recognition of a viral movement protein by the Tomato mosaic virus resistance gene Tm-22

(2011) Michie Kobayashi et al.   JOURNAL OF PLANT PHYSIOLOGY

Intracellular Transport of Plant Viruses: Finding the Door out of the Cell

(2011) James E. Schoelz et al.   Molecular Plant

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Time - the emerging dimension of plant virus studies

(2009) A. J. Gibbs et al.   JOURNAL OF GENERAL VIROLOGY

QMEAN server for protein model quality estimation

(2009) Pascal Benkert et al.   NUCLEIC ACIDS RESEARCH

Nuclear import of CaMV P6 is required for infection and suppression of the RNA silencing factor DRB4

(2008) Gabrielle Haas et al.   EMBO JOURNAL

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus–host interaction networks

(2008) Vincent Navratil et al.   NUCLEIC ACIDS RESEARCH

The Cauliflower Mosaic Virus Protein P6 Forms Motile Inclusions That Traffic along Actin Microfilaments and Stabilize Microtubules

(2008) P. A. Harries et al.   PLANT PHYSIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY