RNA-Seq of Circulating Tumor Cells in Stage II–III Breast Cancer

Challenges in using liquid biopsies for gene expression profiling

(2018) Tania B. Porras et al.   Oncotarget

An RNA-based signature enables high specificity detection of circulating tumor cells in hepatocellular carcinoma

(2017) Mark Kalinich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression of β-globin by cancer cells promotes cell survival during blood-borne dissemination

(2017) Yu Zheng et al.   Nature Communications

Molecular characterization of breast cancer CTCs associated with brain metastasis

(2017) Debasish Boral et al.   Nature Communications

Activating Mutations in PIK3CB Confer Resistance to PI3K Inhibition and Define a Novel Oncogenic Role for p110 

(2016) Y. Nakanishi et al.   CANCER RESEARCH

High Estrogen Receptor β Expression Is Prognostic among Adjuvant Chemotherapy–Treated Patients—Results from a Population-Based Breast Cancer Cohort

(2016) Karin Elebro et al.   CLINICAL CANCER RESEARCH

Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer

(2015) Deena M. A. Gendoo et al.   BIOINFORMATICS

HAND2-mediated proteolysis negatively regulates the function of estrogen receptor α

(2015) TOMOHIKO FUKUDA et al.   Molecular Medicine Reports

Frequent expression of PD-L1 on circulating breast cancer cells

(2015) Martine Mazel et al.   Molecular Oncology

RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance

(2015) D. T. Miyamoto et al.   SCIENCE

EpCAM based capture detects and recovers circulating tumor cells from all subtypes of breast cancer except claudin-low

(2015) Alexander Ring et al.   Oncotarget

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Expression profiling of circulating tumor cells in metastatic breast cancer

(2014) Julie E. Lang et al.   BREAST CANCER RESEARCH AND TREATMENT

Circulating Tumor Cells Predict Survival in Early Average-to-High Risk Breast Cancer Patients

(2014) Brigitte Rack et al.   JNCI-Journal of the National Cancer Institute

Isolation of circulating tumor cells by immunomagnetic enrichment and fluorescence-activated cell sorting (IE/FACS) for molecular profiling

(2013) Mark Jesus M. Magbanua et al.   METHODS

Circulating Breast Tumor Cells Exhibit Dynamic Changes in Epithelial and Mesenchymal Composition

(2013) M. Yu et al.   SCIENCE

Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal

(2013) J. Gao et al.   Science Signaling

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Meta-Analysis of the Prognostic Value of Circulating Tumor Cells in Breast Cancer

(2012) L. Zhang et al.   CLINICAL CANCER RESEARCH

Circulating tumour cells in non-metastatic breast cancer: a prospective study

(2012) Anthony Lucci et al.   LANCET ONCOLOGY

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

(2012) Christina Curtis et al.   NATURE

Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines

(2012) Ashley A. Powell et al.   PLoS One

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

American Society of Clinical Oncology/College of American Pathologists Guideline Recommendations for Immunohistochemical Testing of Estrogen and Progesterone Receptors in Breast Cancer

(2010) M. Elizabeth H. Hammond et al.   JOURNAL OF CLINICAL ONCOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A comparison of RNA amplification techniques at sub-nanogram input concentration

(2009) Julie E Lang et al.   BMC GENOMICS

Circulating Tumor Cells: A Useful Predictor of Treatment Efficacy in Metastatic Breast Cancer

(2009) Minetta C. Liu et al.   JOURNAL OF CLINICAL ONCOLOGY

Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes

(2009) Joel S. Parker et al.   JOURNAL OF CLINICAL ONCOLOGY

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY