Novel Blood-based Transcriptional Biomarker Panels Predict the Late-Phase Asthmatic Response

Allergen-induced Changes in Bone Marrow and Airway Dendritic Cells in Subjects with Asthma

(2016) Amani El-Gammal et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

IL-25 Receptor Expression on Airway Dendritic Cells after Allergen Challenge in Subjects with Asthma

(2016) Damian Tworek et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia

(2016) Lili Wang et al.   CANCER CELL

Lysosomal trafficking regulator Lyst links membrane trafficking to toll-like receptor–mediated inflammatory responses

(2016) Andreas Westphal et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Biomarker Development for Chronic Obstructive Pulmonary Disease. From Discovery to Clinical Implementation

(2015) Don D. Sin et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

A Nonsteroidal Glucocorticoid Receptor Agonist Inhibits Allergen-induced Late Asthmatic Responses

(2015) Gail M. Gauvreau et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Allergen-induced airway responses

(2015) Gail M. Gauvreau et al.   EUROPEAN RESPIRATORY JOURNAL

Senataxin suppresses the antiviral transcriptional response and controls viral biogenesis

(2015) Matthew S Miller et al.   NATURE IMMUNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Effects of inhaled corticosteroids on the dual asthmatic response

(2013) Z. Pelikan   ALLERGY AND ASTHMA PROCEEDINGS

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Inhaled allergen bronchoprovocation tests

(2013) Zuzana Diamant et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Identification of Novel Diagnostic Biomarkers for Asthma and Chronic Obstructive Pulmonary Disease

(2011) Nicole M. Verrills et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

(2011) Philipp Kapranov et al.   BMC BIOLOGY

Use of Exhaled Nitric Oxide Measurement to Identify a Reactive, at-Risk Phenotype among Patients with Asthma

(2010) Raed A. Dweik et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Decreased Fibronectin Production Significantly Contributes to Dysregulated Repair of Asthmatic Epithelium

(2010) Anthony Kicic et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Effects of Interleukin-13 Blockade on Allergen-induced Airway Responses in Mild Atopic Asthma

(2010) Gail M. Gauvreau et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Human adenosine deaminase 2 induces differentiation of monocytes into macrophages and stimulates proliferation of T helper cells and macrophages

(2010) A. V. Zavialov et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Regulation of the mammalian epigenome by long noncoding RNAs

(2008) Joanne Whitehead et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

New implications for the QUAKING RNA binding protein in human disease

(2007) Carol Anne Chénard et al.   JOURNAL OF NEUROSCIENCE RESEARCH