Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution

Protein Maturation and Proteolysis in Plant Plastids, Mitochondria, and Peroxisomes

(2015) Klaas J. van Wijk   Annual Review of Plant Biology

Gene flow betweenDrosophila yakubaandDrosophila santomeain subunit V of cytochromecoxidase: A potential case of cytonuclear cointrogression

(2015) Emily A. Beck et al.   EVOLUTION

Cytonuclear Interactions in the Evolution of Animal Mitochondrial tRNA Metabolism

(2015) Walker Pett et al.   Genome Biology and Evolution

Parallel Structural Evolution of Mitochondrial Ribosomes and OXPHOS Complexes

(2015) Eli O. van der Sluis et al.   Genome Biology and Evolution

Mitonuclear Ecology

(2015) Geoffrey E. Hill   MOLECULAR BIOLOGY AND EVOLUTION

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

(2015) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Coordinated Rates of Evolution between Interacting Plastid and Nuclear Genes in Geraniaceae

(2015) Jin Zhang et al.   PLANT CELL

Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes

(2015) Elizabeth Skippington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

(2015) David Roy Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression

(2015) John F. Allen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein–Protein Interfaces from Cytochrome c Oxidase I Evolve Faster than Nonbinding Surfaces, yet Negative Selection Is the Driving Force

(2014) Juan Carlos Aledo et al.   Genome Biology and Evolution

Unprecedented Heterogeneity in the Synonymous Substitution Rate within a Plant Genome

(2014) Andan Zhu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida

(2014) David Roy Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Using plants to elucidate the mechanisms of cytonuclear co-evolution

(2014) Daniel B. Sloan   NEW PHYTOLOGIST

Evidence of Positive Selection in Mitochondrial Complexes I and V of the African Elephant

(2014) Tabitha M. Finch et al.   PLoS One

Mito-nuclear co-evolution: the positive and negative sides of functional ancient mutations

(2014) Liron Levin et al.   Frontiers in Genetics

Cytonuclear Genomic Interactions and Hybrid Breakdown

(2013) Ronald S. Burton et al.   Annual Review of Ecology Evolution and Systematics

Evolutionary perspectives on the links between mitochondrial genotype and disease phenotype

(2013) Damian K. Dowling   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Tuning a ménage à trois: Co-evolution and co-adaptation of nuclear and organellar genomes in plants

(2013) Stephan Greiner et al.   BIOESSAYS

Pleiotropic Effects of a Mitochondrial–Nuclear Incompatibility Depend upon the Accelerating Effect of Temperature in Drosophila

(2013) Luke A. Hoekstra et al.   GENETICS

Mitochondrial–Nuclear Interactions: Compensatory Evolution or Variable Functional Constraint among Vertebrate Oxidative Phosphorylation Genes?

(2013) Feifei Zhang et al.   Genome Biology and Evolution

Cytonuclear Interactions and Relaxed Selection Accelerate Sequence Evolution in Organelle Ribosomes

(2013) Daniel B. Sloan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

(2013) Juliane C. Dohm et al.   NATURE

BeAtMuSiC: prediction of changes in protein–protein binding affinity on mutations

(2013) Yves Dehouck et al.   NUCLEIC ACIDS RESEARCH

An Incompatibility between a Mitochondrial tRNA and Its Nuclear-Encoded tRNA Synthetase Compromises Development and Fitness in Drosophila

(2013) Colin D. Meiklejohn et al.   PLoS Genetics

Thermodynamic Stability Explains the Differential Evolutionary Dynamics of Cytochrome b and COX I in Mammals

(2012) Juan Carlos Aledo et al.   JOURNAL OF MOLECULAR EVOLUTION

High Levels of Gene Expression Explain the Strong Evolutionary Constraint of Mitochondrial Protein-Coding Genes

(2012) B. Nabholz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evidence for Compensatory Evolution of Ribosomal Proteins in Response to Rapid Divergence of Mitochondrial rRNA

(2012) F. S. Barreto et al.   MOLECULAR BIOLOGY AND EVOLUTION

A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?

(2012) Ronald S. Burton et al.   MOLECULAR ECOLOGY

Relative rates of evolution among the three genetic compartments of the red alga Porphyra differ from those of green plants and do not correlate with genome architecture

(2012) David R. Smith et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Intraspecific variation in mitochondrial genome sequence, structure, and gene content inSilene vulgaris, an angiosperm with pervasive cytoplasmic male sterility

(2012) Daniel B. Sloan et al.   NEW PHYTOLOGIST

Phylogenetic Relationships of Silene multinervia and Silene Section Conoimorpha (Caryophyllaceae)

(2012) Anja. Rautenberg et al.   SYSTEMATIC BOTANY

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

Mitonuclear match: Optimizing fitness and fertility over generations drives ageing within generations

(2011) Nick Lane   BIOESSAYS

Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis

(2011) A. Darracq et al.   Genome Biology and Evolution

Mitochondrial–Nuclear Interactions and Accelerated Compensatory Evolution: Evidence from the Primate Cytochrome c Oxidase Complex

(2011) Naoki Osada et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution

(2011) S. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Somatic Mitochondrial DNA Mutations in Mammalian Aging

(2010) Nils-Göran Larsson   Annual Review of Biochemistry

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia

(2010) Daniel B Sloan et al.   BMC EVOLUTIONARY BIOLOGY

Organization and expression of organellar genomes

(2010) A. C. Barbrook et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cytoplasmic phylogeny and evidence of cyto-nuclear co-adaptation in Arabidopsis thaliana

(2010) Michaël Moison et al.   PLANT JOURNAL

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial bioenergetics as a major motive force of speciation

(2009) Moran Gershoni et al.   BIOESSAYS

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

(2009) Benoit Nabholz et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae

(2009) Daniel B Sloan et al.   BMC EVOLUTIONARY BIOLOGY

The causes of mutation accumulation in mitochondrial genomes

(2009) M. Neiman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

(2008) G DROUIN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures

(2008) N. Fukuhara et al.   NUCLEIC ACIDS RESEARCH

Adaptive Evolution and Functional Redesign of Core Metabolic Proteins in Snakes

(2008) Todd A. Castoe et al.   PLoS One

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA