A tool named Iris for versatile high-throughput phenotyping in microorganisms

A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria

(2016) Jason M. Peters et al.   CELL

Single-cell twitching chemotaxis in developing biofilms

(2016) Nuno M. Oliveira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S

(2016) Anthony L. Shiver et al.   PLoS Genetics

Mechanical Genomics Identifies Diverse Modulators of Bacterial Cell Stiffness

(2016) George K. Auer et al.   Cell Systems

High-throughput bacterial functional genomics in the sequencing era

(2015) Andrew N Gray et al.   CURRENT OPINION IN MICROBIOLOGY

Genetic control of bacterial biofilms

(2015) Krystyna I. Wolska et al.   JOURNAL OF APPLIED GENETICS

The Bacterial Curli System Possesses a Potent and Selective Inhibitor of Amyloid Formation

(2015) Margery L. Evans et al.   MOLECULAR CELL

Colony-morphology screening uncovers a role for thePseudomonas aeruginosanitrogen-related phosphotransferase system in biofilm formation

(2015) Matthew T. Cabeen et al.   MOLECULAR MICROBIOLOGY

An expanded regulatory network temporally controlsCandida albicansbiofilm formation

(2015) Emily P. Fox et al.   MOLECULAR MICROBIOLOGY

Bacterial protein networks: properties and functions

(2015) Athanasios Typas et al.   NATURE REVIEWS MICROBIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis

(2015) Bradley M. Hover et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Type IV pili mechanochemically regulate virulence factors inPseudomonas aeruginosa

(2015) Alexandre Persat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deletion Mutant Library for Investigation of Functional Outputs of Cyclic Diguanylate Metabolism in Pseudomonas aeruginosa PA14

(2014) Dae-Gon Ha et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Colony-live —a high-throughput method for measuring microbial colony growth kinetics— reveals diverse growth effects of gene knockouts in Escherichia coli

(2014) Rikiya Takeuchi et al.   BMC MICROBIOLOGY

Unraveling the Biology of a Fungal Meningitis Pathogen Using Chemical Genetics

(2014) Jessica C.S. Brown et al.   CELL

Detecting Envelope Stress by Monitoring β-Barrel Assembly

(2014) Seung-Hyun Cho et al.   CELL

Redox-driven regulation of microbial community morphogenesis

(2014) Chinweike Okegbe et al.   CURRENT OPINION IN MICROBIOLOGY

Stress responses go three dimensional - the spatial order of physiological differentiation in bacterial macrocolony biofilms

(2014) Diego O. Serra et al.   ENVIRONMENTAL MICROBIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Defined Single-Gene and Multi-Gene Deletion Mutant Collections in Salmonella enterica sv Typhimurium

(2014) Steffen Porwollik et al.   PLoS One

gitter: A Robust and Accurate Method for Quantification of Colony Sizes From Plate Images

(2014) Omar Wagih et al.   G3-Genes Genomes Genetics

A Genome-Wide Screen for Bacterial Envelope Biogenesis Mutants Identifies a Novel Factor Involved in Cell Wall Precursor Metabolism

(2014) Catherine Paradis-Bleau et al.   PLoS Genetics

Balony: a software package for analysis of data generated by synthetic genetic array experiments

(2013) Barry P Young et al.   BMC BIOINFORMATICS

High-throughput approaches to understanding gene function and mapping network architecture in bacteria

(2013) Ana Rita Brochado et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial Community Morphogenesis Is Intimately Linked to the Intracellular Redox State

(2013) L. E. P. Dietrich et al.   JOURNAL OF BACTERIOLOGY

Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms

(2013) D. O. Serra et al.   JOURNAL OF BACTERIOLOGY

The Platform Protein Is Essential for Type IV Pilus Biogenesis

(2013) Herlinder K. Takhar et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens

(2013) Omar Wagih et al.   NUCLEIC ACIDS RESEARCH

Genetic characterization of moaB mutants of Escherichia coli

(2013) Stanislav G. Kozmin et al.   RESEARCH IN MICROBIOLOGY

Pseudomonas aeruginosaTwitching Motility: Type IV Pili in Action

(2012) Lori L. Burrows   Annual Review of Microbiology

A Recently Evolved Transcriptional Network Controls Biofilm Development in Candida albicans

(2012) Clarissa J. Nobile et al.   CELL

Minor Pilins of the Type IV Pilus System Participate in the Negative Regulation of Swarming Motility

(2012) S. L. Kuchma et al.   JOURNAL OF BACTERIOLOGY

Hierarchical Modularity and the Evolution of Genetic Interactomes across Species

(2012) Colm J. Ryan et al.   MOLECULAR CELL

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Localized cell death focuses mechanical forces during 3D patterning in a biofilm

(2012) M. Asally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Redundant phenazine operons in Pseudomonas aeruginosa exhibit environment-dependent expression and differential roles in pathogenicity

(2012) D. A. Recinos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Gene Deletion Analysis Exploring Yeast Filamentous Growth

(2012) O. Ryan et al.   SCIENCE

The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata

(2011) D. O. Inglis et al.   NUCLEIC ACIDS RESEARCH

Colonyzer: automated quantification of micro-organism growth characteristics on solid agar

(2010) Conor Lawless et al.   BMC BIOINFORMATICS

ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data

(2010) John C Dittmar et al.   BMC BIOINFORMATICS

Regulation of Peptidoglycan Synthesis by Outer-Membrane Proteins

(2010) Athanasios Typas et al.   CELL

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity

(2010) Suzanne M Noble et al.   NATURE GENETICS

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

(2010) Anastasia Baryshnikova et al.   NATURE METHODS

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

A Phenotypic Profile of the Candida albicans Regulatory Network

(2009) Oliver R. Homann et al.   PLoS Genetics

DOOR: a database for prokaryotic operons

(2008) Fenglou Mao et al.   NUCLEIC ACIDS RESEARCH

Redox-Active Antibiotics Control Gene Expression and Community Behavior in Divergent Bacteria

(2008) L. E. P. Dietrich et al.   SCIENCE