Trypanosoma brucei metabolism is under circadian control

Trypanosoma brucei Parasites Occupy and Functionally Adapt to the Adipose Tissue in Mice

(2016) Sandra Trindade et al.   Cell Host & Microbe

Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei

(2016) Mario Dejung et al.   PLoS Pathogens

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

conting: AnRPackage for Bayesian Analysis of Complete and Incomplete Contingency Tables

(2015) Antony M. Overstall et al.   Journal of Statistical Software

Metabolic and Nontranscriptional Circadian Clocks: Eukaryotes

(2014) Akhilesh B. Reddy et al.   Annual Review of Biochemistry

Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis

(2014) Christoph A. Thaiss et al.   CELL

Diet and Feeding Pattern Affect the Diurnal Dynamics of the Gut Microbiome

(2014) Amir Zarrinpar et al.   Cell Metabolism

Circadian Clock Proteins and Immunity

(2014) Anne M. Curtis et al.   IMMUNITY

Non-Circadian Expression Masking Clock-Driven Weak Transcription Rhythms in U2OS Cells

(2014) Julia Hoffmann et al.   PLoS One

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential effects of light and feeding on circadian organization of peripheral clocks in a forebrain Bmal1 mutant

(2014) Mariko Izumo et al.   eLife

Insights into the regulation of GPEET procyclin during differentiation from early to late procyclic forms of Trypanosoma brucei

(2013) Sebastian Knüsel et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Genome-wide dissection of the quorum sensing signalling pathway in Trypanosoma brucei

(2013) Binny M. Mony et al.   NATURE

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain

(2012) M. E. Hughes et al.   GENOME RESEARCH

Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals

(2012) N. Koike et al.   SCIENCE

Transmission Stages Dominate Trypanosome Within-Host Dynamics during Chronic Infections

(2011) Paula MacGregor et al.   Cell Host & Microbe

Keeping the clock set under the midnight sun: diurnal periodicity and synchrony of avian Isospora parasites cycle in the High Arctic

(2011) OLGA V. DOLNIK et al.   PARASITOLOGY

Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation

(2010) R. Yang et al.   BIOINFORMATICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Temperature as a Universal Resetting Cue for Mammalian Circadian Oscillators

(2010) E. D. Buhr et al.   SCIENCE

Circadian Integration of Metabolism and Energetics

(2010) J. Bass et al.   SCIENCE

Genome-Wide Analysis of Light- and Temperature-Entrained Circadian Transcripts in Caenorhabditis elegans

(2010) Alexander M. van der Linden et al.   PLOS BIOLOGY

Spliced Leader Trapping Reveals Widespread Alternative Splicing Patterns in the Highly Dynamic Transcriptome of Trypanosoma brucei

(2010) Daniel Nilsson et al.   PLoS Pathogens

rtracklayer: an R package for interfacing with genome browsers

(2009) M. Lawrence et al.   BIOINFORMATICS

Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei

(2009) Sarah Kabani et al.   BMC GENOMICS

Feather Mites and Internal Parasites in Small Ground Finches (Geospiza fuliginosa, Emberizidae) From the Galapagos Islands (Equador)

(2009) Karin M. Lindström et al.   JOURNAL OF PARASITOLOGY

Epigenetic regulation in African trypanosomes: a new kid on the block

(2009) Luisa M. Figueiredo et al.   NATURE REVIEWS MICROBIOLOGY

The Implications of Multiple Circadian Clock Origins

(2009) Michael Rosbash   PLOS BIOLOGY

Harmonics of Circadian Gene Transcription in Mammals

(2009) Michael E. Hughes et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Analysis of the 24-h microfilarial periodicity of Mansonella perstans

(2008) Santa Maria Asio et al.   PARASITOLOGY RESEARCH