A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities

Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria

(2016) Steven Smriga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

(2016) Christian Rinke et al.   PeerJ

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemosensory signaling systems that control bacterial survival

(2014) Kuang He et al.   TRENDS IN MICROBIOLOGY

A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals

(2013) Melissa Garren et al.   ISME Journal

Ecology and Physics of Bacterial Chemotaxis in the Ocean

(2012) Roman Stocker et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Modular control of multiple pathways using engineered orthogonal T7 polymerases

(2012) Karsten Temme et al.   NUCLEIC ACIDS RESEARCH

Trade-Offs of Chemotactic Foraging in Turbulent Water

(2012) J. R. Taylor et al.   SCIENCE

Development of a genetic system for Marinobacter adhaerens HP15 involved in marine aggregate formation by interacting with diatom cells

(2011) Eva C. Sonnenschein et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Microfluidics for bacterial chemotaxis

(2010) Tanvir Ahmed et al.   Integrative Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Experimental Verification of the Behavioral Foundation of Bacterial Transport Parameters Using Microfluidics

(2008) Tanvir Ahmed et al.   BIOPHYSICAL JOURNAL

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

(2008) R. Stocker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA