Genotyping-by-sequencing of pear (Pyrus spp.) accessions unravels novel patterns of genetic diversity and selection footprints

A novel random effect model for GWAS meta-analysis and its application to trans-ethnic meta-analysis

(2016) Jingchunzi Shi et al.   BIOMETRICS

Genome mapping of postzygotic hybrid necrosis in an interspecific pear population

(2016) Sara Montanari et al.   Horticulture Research

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Identification of QTLs controlling harvest time and fruit skin color in Japanese pear (Pyrus pyrifolia Nakai)

(2015) Toshiya Yamamoto et al.   BREEDING SCIENCE

Genetic, metabolite and developmental determinism of fruit friction discolouration in pear

(2014) Munazza Saeed et al.   BMC PLANT BIOLOGY

High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers

(2014) Jun Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic mapping of polygenic scab (Venturia pirina) resistance in an interspecific pear family

(2014) Kyungho Won et al.   MOLECULAR BREEDING

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

The red sport of ‘Zaosu’ pear and its red-striped pigmentation pattern are associated with demethylation of the PyMYB10 promoter

(2014) Minjie Qian et al.   PHYTOCHEMISTRY

Molecular-level and trait-level differentiation between the cultivated apple (Malus× domestica Borkh.) and its main progenitor Malus sieversii

(2014) Satish Kumar et al.   Plant Genetic Resources-Characterization and Utilization

The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)

(2014) David Chagné et al.   PLoS One

Identifying genetic diversity and a preliminary core collection of Pyrus pyrifolia cultivars by a genome-wide set of SSR markers

(2014) Yue Song et al.   SCIENTIA HORTICULTURAE

The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers

(2014) Hua Wang et al.   Tree Genetics & Genomes

Potential assessment of genome-wide association study and genomic selection in Japanese pear Pyrus pyrifolia

(2013) Hiroyoshi Iwata et al.   BREEDING SCIENCE

Population genetic structure in a threatened tree, Pyrus calleryana var. dimorphophylla revealed by chloroplast DNA and nuclear SSR locus polymorphisms

(2013) Shuri Kato et al.   CONSERVATION GENETICS

The Methylation of the PcMYB10 Promoter Is Associated with Green-Skinned Sport in Max Red Bartlett Pear

(2013) Z. Wang et al.   PLANT PHYSIOLOGY

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Do highly divergent loci reside in genomic regions affecting reproductive isolation? A test using next-generation sequence data in Timema stick insects

(2012) Patrik Nosil et al.   BMC EVOLUTIONARY BIOLOGY

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Redefinition of the map position and validation of a major quantitative trait locus for fire blight resistance of the pear cultivar ‘Harrow Sweet’ (Pyrus communisL.)

(2012) Pierre-Marie F. Le Roux et al.   PLANT BREEDING

Genetic Diversity of Some Pear Cultivars and Genotypes Using Simple Sequence Repeat (SSR) Markers

(2012) J. Erfani et al.   PLANT MOLECULAR BIOLOGY REPORTER

An AFLP, SRAP, and SSR Genetic Linkage Map and Identification of QTLs for Fruit Traits in Pear (Pyrus L.)

(2012) Rui-ping Zhang et al.   PLANT MOLECULAR BIOLOGY REPORTER

The Genetics of Hybrid Incompatibilities

(2011) Shamoni Maheshwari et al.   Annual Review of Genetics

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

Footprints of selection in the ancestral admixture of a New World Creole cattle breed

(2011) MATHIEU GAUTIER et al.   MOLECULAR ECOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae

(2010) Kui Lin-Wang et al.   BMC PLANT BIOLOGY

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

Mapping of an anthocyanin-regulating MYB transcription factor and its expression in red and green pear, Pyrus communis

(2010) Luca Pierantoni et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Introgression between native and prehistorically naturalized (archaeophytic) wild pear (Pyrus spp.) populations in Northern Tohoku, Northeast Japan

(2009) Hiroyuki Iketani et al.   CONSERVATION GENETICS

Genomic selection in admixed and crossbred populations 1

(2009) A. Toosi et al.   JOURNAL OF ANIMAL SCIENCE

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The inheritance of the red colour character in European pear (Pyrus communis) and its map position in the mutated cultivar ‘Max Red Bartlett’

(2008) L. Dondini et al.   PLANT BREEDING