A longitudinal study of the diabetic skin and wound microbiome

Temporal Stability in Chronic Wound Microbiota Is Associated With Poor Healing

(2017) Michael Loesche et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences

(2017) Emily K. Cope et al.   Microbiome

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

One step closer to understanding the role of bacteria in diabetic foot ulcers: characterising the microbiome of ulcers

(2016) Karen Smith et al.   BMC MICROBIOLOGY

Rates of Community-based Antibiotic Prescriptions and Hospital-treated Infections in Individuals With and Without Type 2 Diabetes: A Danish Nationwide Cohort Study, 2004–2012

(2016) Anil Mor et al.   CLINICAL INFECTIOUS DISEASES

Skin microbiota-associated inflammation precedes autoantibody induced tissue damage in experimental epidermolysis bullosa acquisita

(2016) Christoph T. Ellebrecht et al.   JOURNAL OF AUTOIMMUNITY

Skin Microbiome Surveys Are Strongly Influenced by Experimental Design

(2016) Jacquelyn S. Meisel et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Lower Neighborhood Socioeconomic Status Associated with Reduced Diversity of the Colonic Microbiota in Healthy Adults

(2016) Gregory E. Miller et al.   PLoS One

Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols

(2016) Lindsey Bomar et al.   mBio

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome

(2016) Marc A. Sze et al.   mBio

Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome

(2016) Ludovic Giloteaux et al.   Microbiome

The Role of Gut Microflora and the Cholinergic Anti-inflammatory Neuroendocrine System in Diabetes Mellitus

(2016) Parth J. Parekh et al.   Frontiers in Endocrinology

Allergy associations with the adult fecal microbiota: Analysis of the American Gut Project

(2016) Xing Hua et al.   EBioMedicine

Reduced airway microbiota diversity is associated with elevated allergic respiratory inflammation

(2015) Wenkai Yu et al.   ANNALS OF ALLERGY ASTHMA & IMMUNOLOGY

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

The Role of the Skin Microbiome in Atopic Dermatitis

(2015) Michael R. Williams et al.   CURRENT ALLERGY AND ASTHMA REPORTS

Biodiversity and Resilience of Ecosystem Functions

(2015) Tom H. Oliver et al.   TRENDS IN ECOLOGY & EVOLUTION

Analysis of the chronic wound microbiota of 2,963 patients by 16S rDNA pyrosequencing

(2015) Randall D. Wolcott et al.   WOUND REPAIR AND REGENERATION

Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation

(2014) Nanna Fyhrquist et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

The Vaginal Microbiota: What Have We Learned after a Decade of Molecular Characterization?

(2014) Janneke H. H. M. van de Wijgert et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

Prolonged use of a proton pump inhibitor reduces microbial diversity: implications for Clostridium difficile susceptibility

(2014) Charlie T Seto et al.   Microbiome

Burden of Diabetic Foot Ulcers for Medicare and Private Insurers

(2013) J. Bradford Rice et al.   DIABETES CARE

Global estimates of diabetes prevalence for 2013 and projections for 2035

(2013) L. Guariguata et al.   DIABETES RESEARCH AND CLINICAL PRACTICE

Quantitation and Composition of Cutaneous Microbiota in Diabetic and Nondiabetic Men

(2013) H. Redel et al.   JOURNAL OF INFECTIOUS DISEASES

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Fermentation of Propionibacterium acnes, a Commensal Bacterium in the Human Skin Microbiome, as Skin Probiotics against Methicillin-Resistant Staphylococcus aureus

(2013) Muya Shu et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Regulation of the immune system by biodiversity from the natural environment: An ecosystem service essential to health

(2013) G. A. Rook   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of the gut microbiome on mucosal inflammation

(2013) Warren Strober   TRENDS IN IMMUNOLOGY

Increased Skin Inflammation and Blood Vessel Density in Human and Experimental Diabetes

(2013) Ana Tellechea et al.   International Journal of Lower Extremity Wounds

Community differentiation of the cutaneous microbiota in psoriasis

(2013) Alexander V Alekseyenko et al.   Microbiome

The Neuropathic Diabetic Foot Ulcer Microbiome Is Associated With Clinical Factors

(2012) S. E. Gardner et al.   DIABETES

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The microbiome in wound repair and tissue fibrosis

(2012) Brittan S Scales et al.   JOURNAL OF PATHOLOGY

Skin signs in diabetes mellitus

(2012) B. Behm et al.   JOURNAL OF THE EUROPEAN ACADEMY OF DERMATOLOGY AND VENEREOLOGY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Species-Level Analysis of DNA Sequence Data from the NIH Human Microbiome Project

(2012) Sean Conlan et al.   PLoS One

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Experimental and analytical tools for studying the human microbiome

(2011) Justin Kuczynski et al.   NATURE REVIEWS GENETICS

Wound healing in skin promoted by inoculation with Pseudomonas aeruginosaPAO1: The critical role of tumor necrosis factor-α secreted from infiltrating neutrophils

(2011) Emi Kanno et al.   WOUND REPAIR AND REGENERATION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

Activation of TLR2 by a Small Molecule Produced by Staphylococcus epidermidis Increases Antimicrobial Defense against Bacterial Skin Infections

(2010) Yuping Lai et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Staphylococcus epidermidis Esp inhibits Staphylococcus aureus biofilm formation and nasal colonization

(2010) Tadayuki Iwase et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Staphylococcus epidermidis Antimicrobial δ-Toxin (Phenol-Soluble Modulin-γ) Cooperates with Host Antimicrobial Peptides to Kill Group A Streptococcus

(2010) Anna L. Cogen et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Selective Antimicrobial Action Is Provided by Phenol-Soluble Modulins Derived from Staphylococcus epidermidis, a Normal Resident of the Skin

(2009) Anna L. Cogen et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Commensal bacteria regulate Toll-like receptor 3–dependent inflammation after skin injury

(2009) Yuping Lai et al.   NATURE MEDICINE

Polymicrobial Nature of Chronic Diabetic Foot Ulcer Biofilm Infections Determined Using Bacterial Tag Encoded FLX Amplicon Pyrosequencing (bTEFAP)

(2008) Scot E. Dowd et al.   PLoS One

Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41

(2008) B. S. Samuel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA