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(2016) Erica C. Pehrsson et al.   NATURE

An assay for determining minimal concentrations of antibiotics that drive horizontal transfer of resistance

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Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems

(2016) Noelle R. Noyes et al.   Scientific Reports

Prevalence and proliferation of antibiotic resistance genes in two municipal wastewater treatment plants

(2015) Daqing Mao et al.   WATER RESEARCH

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(2015) Sai Manasa Jandhyala   WORLD JOURNAL OF GASTROENTEROLOGY

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions

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Handling Temperature Bursts Reaching 464°C: Different Microbial Strategies in the Sisters Peak Hydrothermal Chimney

(2014) Mirjam Perner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

HGTector: an automated method facilitating genome-wide discovery of putative horizontal gene transfers

(2014) Qiyun Zhu et al.   BMC GENOMICS

Prevalence and antimicrobial resistance ofArcobacterspecies isolated from poultry meat in Iran

(2014) Ebrahim Rahimi   BRITISH POULTRY SCIENCE

Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake

(2014) Nadine Czekalski et al.   ISME Journal

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

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(2014) Nikolina Udikovic-Kolic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes

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Population dynamics and ecology of Arcobacter in sewage

(2014) Jenny C. Fisher et al.   Frontiers in Microbiology

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Adherence to and Invasion of Human Intestinal Cells by Arcobacter Species and Their Virulence Genotypes

(2013) A. Levican et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales

(2013) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

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(2013) Ana Rita Varela et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Presence of virulence genes, adhesion and invasion ofArcobacter butzleri

(2013) G. Karadas et al.   JOURNAL OF APPLIED MICROBIOLOGY

The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria

(2013) Elizabeth MH Wellington et al.   LANCET INFECTIOUS DISEASES

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

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(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Exploring the Diversity of Arcobacter butzleri from Cattle in the UK Using MLST and Whole Genome Sequencing

(2013) J. Yvette Merga et al.   PLoS One

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

(2013) L. Rizzo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Reclaimed water as a reservoir of antibiotic resistance genes: distribution system and irrigation implications

(2013) Nicole Fahrenfeld et al.   Frontiers in Microbiology

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(2012) Doug Hyatt et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Bacterial stress responses as determinants of antimicrobial resistance

(2012) K. Poole   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Increased Levels of Multiresistant Bacteria and Resistance Genes after Wastewater Treatment and Their Dissemination into Lake Geneva, Switzerland

(2012) Nadine Czekalski et al.   Frontiers in Microbiology

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Occurrence of Putative Virulence Genes in Arcobacter Species Isolated from Humans and Animals

(2011) L. Douidah et al.   JOURNAL OF CLINICAL MICROBIOLOGY

In vitro Antibacterial Susceptibility of Arcobacter butzleri Isolated from Different Sources

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Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The changing epidemiology of resistance

(2009) P. M. Hawkey et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Antibiotics and antibiotic resistance in water environments

(2008) Fernando Baquero et al.   CURRENT OPINION IN BIOTECHNOLOGY

Presence of Arcobacter spp. in environmental waters correlates with high levels of fecal pollution

(2008) Luis Collado et al.   ENVIRONMENTAL MICROBIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY