Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics

MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

(2015) Pavel Petrenko et al.   BMC BIOLOGY

Microbial diversity of hypersaline environments: a metagenomic approach

(2015) Antonio Ventosa et al.   CURRENT OPINION IN MICROBIOLOGY

Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

(2015) Bernhard Tschitschko et al.   ISME Journal

Diversity of Heterotrophic Protists from Extremely Hypersaline Habitats

(2015) Jong Soo Park et al.   PROTIST

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

(2015) Stephen Nayfach et al.   PLoS Computational Biology

The Santa Pola saltern as a model for studying the microbiota of hypersaline environments

(2014) Antonio Ventosa et al.   EXTREMOPHILES

Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics

(2014) Ana B. Fernández et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov.

(2014) R. S. Gupta et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Unveiling viral–host interactions within the ‘microbial dark matter’

(2014) Manuel Martínez-García et al.   Nature Communications

Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach

(2014) Ana B. Fernández et al.   Frontiers in Microbiology

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community

(2013) Sheila Podell et al.   ISME Journal

Crass: identification and reconstruction of CRISPR from unassembled metagenomic data

(2013) Connor T. Skennerton et al.   NUCLEIC ACIDS RESEARCH

Essential requirements for the detection and degradation of invaders by theHaloferax volcaniiCRISPR/Cas system I-B

(2013) Lisa-Katharina Maier et al.   RNA Biology

Pigeon: A Design Visualizer for Synthetic Biology

(2013) Swapnil Bhatia et al.   ACS Synthetic Biology

Virus-Host and CRISPR Dynamics in Archaea-Dominated Hypersaline Lake Tyrrell, Victoria, Australia

(2013) Joanne B. Emerson et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Dihydroxyacetone metabolism in Haloferax volcanii

(2013) Matthew Ouellette et al.   Frontiers in Microbiology

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia

(2013) Karla B. Heidelberg et al.   Frontiers in Microbiology

CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes

(2013) Quan Zhang et al.   GENOME BIOLOGY

Culture-Independent Approaches for Studying Viruses from Hypersaline Environments

(2012) Fernando Santos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei, a Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Producer

(2012) J. Han et al.   JOURNAL OF BACTERIOLOGY

Reconstructing Viral Genomes from the Environment Using Fosmid Clones: The Case of Haloviruses

(2012) Inmaculada Garcia-Heredia et al.   PLoS One

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

(2011) Bo Liu et al.   BMC GENOMICS

Global network of specific virus-host interactions in hypersaline environments

(2011) Nina S. Atanasova et al.   ENVIRONMENTAL MICROBIOLOGY

Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome

(2011) Margret E. Berg Miller et al.   ENVIRONMENTAL MICROBIOLOGY

Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage

(2011) Rika E. Anderson et al.   FEMS MICROBIOLOGY ECOLOGY

Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient

(2011) Yvan Bettarel et al.   FEMS MICROBIOLOGY ECOLOGY

Activity and Transcriptional Regulation of Bacterial Protein-Like Glycerol-3-Phosphate Dehydrogenase of the Haloarchaea in Haloferax volcanii

(2011) K. S. Rawls et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Haloarcula hispanica, a Model Haloarchaeon for Studying Genetics, Metabolism, and Virus-Host Interaction

(2011) H. Liu et al.   JOURNAL OF BACTERIOLOGY

Haloquadratum walsbyi : Limited Diversity in a Global Pond

(2011) Mike L. Dyall-Smith et al.   PLoS One

Archaeal CRISPR-based immune systems: exchangeable functional modules

(2011) Roger A. Garrett et al.   TRENDS IN MICROBIOLOGY

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

The metavirome of a hypersaline environment

(2010) Fernando Santos et al.   ENVIRONMENTAL MICROBIOLOGY

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

(2010) Amber L. Hartman et al.   PLoS One

Roles of viruses in the environment

(2009) Forest Rohwer et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of Haloquadratum and other haloarchaea in three, geographically distant, Australian saltern crystallizer ponds

(2009) Dickson Oh et al.   EXTREMOPHILES

Glycerol-Mediated Repression of Glucose Metabolism and Glycerol Kinase as the Sole Route of Glycerol Catabolism in the Haloarchaeon Haloferax volcanii

(2009) K. E. Sherwood et al.   JOURNAL OF BACTERIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

(2007) Rotem Sorek et al.   NATURE REVIEWS MICROBIOLOGY