Flagella, flexibility and flow: Physical processes in microbial ecology

Green Algae as Model Organisms for Biological Fluid Dynamics

(2015) Raymond E. Goldstein   Annual Review of Fluid Mechanics

The Mechanical World of Bacteria

(2015) Alexandre Persat et al.   CELL

Microbes in flow

(2015) Roberto Rusconi et al.   CURRENT OPINION IN MICROBIOLOGY

The trapping in high-shear regions of slender bacteria undergoing chemotaxis in a channel

(2015) R. N. Bearon et al.   JOURNAL OF FLUID MECHANICS

Metachronal waves in the flagellar beating ofVolvoxand their hydrodynamic origin

(2015) Douglas R. Brumley et al.   Journal of the Royal Society Interface

Shear-induced orientational dynamics and spatial heterogeneity in suspensions of motile phytoplankton

(2015) Michael T. Barry et al.   Journal of the Royal Society Interface

Live from under the lens: exploring microbial motility with dynamic imaging and microfluidics

(2015) Kwangmin Son et al.   NATURE REVIEWS MICROBIOLOGY

Physics of microswimmers—single particle motion and collective behavior: a review

(2015) J Elgeti et al.   REPORTS ON PROGRESS IN PHYSICS

Flexibility of bacterial flagella in external shear results in complex swimming trajectories

(2014) M. Tournus et al.   Journal of the Royal Society Interface

Lag, lock, sync, slip: the many 'phases' of coupled flagella

(2014) K. Y. Wan et al.   Journal of the Royal Society Interface

Bacterial transport suppressed by fluid shear

(2014) Roberto Rusconi et al.   Nature Physics

Active Phase and Amplitude Fluctuations of Flagellar Beating

(2014) Rui Ma et al.   PHYSICAL REVIEW LETTERS

Rhythmicity, Recurrence, and Recovery of Flagellar Beating

(2014) Kirsty Y. Wan et al.   PHYSICAL REVIEW LETTERS

Vortical ciliary flows actively enhance mass transport in reef corals

(2014) Orr H. Shapiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phase-locked spiking of inner ear hair cells and the driven noisy Adler equation

(2014) R. Shlomovitz et al.   Interface Focus

Flagellar synchronization through direct hydrodynamic interactions

(2014) Douglas R Brumley et al.   eLife

Hydrodynamic synchronization between objects with cyclic rigid trajectories

(2013) Nariya Uchida et al.   EUROPEAN PHYSICAL JOURNAL E

Periodic and quasiperiodic motion of an elongated microswimmer in Poiseuille flow

(2013) Andreas Zöttl et al.   EUROPEAN PHYSICAL JOURNAL E

Accumulation of motile elongated micro-organisms in turbulence

(2013) Caijuan Zhan et al.   JOURNAL OF FLUID MECHANICS

Bacteria can exploit a flagellar buckling instability to change direction

(2013) Kwangmin Son et al.   Nature Physics

Microalga propels along vorticity direction in a shear flow

(2013) Anwar Chengala et al.   PHYSICAL REVIEW E

Flagellar waveform dynamics of freely swimming algal cells

(2013) H. Kurtuldu et al.   PHYSICAL REVIEW E

Optimal Hydrodynamic Synchronization of Colloidal Rotors

(2013) Jurij Kotar et al.   PHYSICAL REVIEW LETTERS

Antiphase Synchronization in a Flagellar-Dominance Mutant ofChlamydomonas

(2013) Kyriacos C. Leptos et al.   PHYSICAL REVIEW LETTERS

Cell-body rocking is a dominant mechanism for flagellar synchronization in a swimming alga

(2013) V. F. Geyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biofilm streamers cause catastrophic disruption of flow with consequences for environmental and medical systems

(2013) Knut Drescher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergence of metachronal waves in cilia arrays

(2013) J. Elgeti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mathematics for streamlined biofuel production from unicellular algae

(2013) Martin A Bees et al.   Biofuels-UK

Direct Upstream Motility in Escherichia coli

(2012) Tolga Kaya et al.   BIOPHYSICAL JOURNAL

Generic flow profiles induced by a beating cilium

(2012) A. Vilfan   EUROPEAN PHYSICAL JOURNAL E

Flagellar Hook Flexibility Is Essential for Bundle Formation in Swimming Escherichia coli Cells

(2012) M. T. Brown et al.   JOURNAL OF BACTERIOLOGY

Human gut-on-a-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow

(2012) Hyun Jung Kim et al.   LAB ON A CHIP

Ecology and Physics of Bacterial Chemotaxis in the Ocean

(2012) Roman Stocker et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Flagellar Synchronization Independent of Hydrodynamic Interactions

(2012) Benjamin M. Friedrich et al.   PHYSICAL REVIEW LETTERS

Nonlinear Dynamics of a Microswimmer in Poiseuille Flow

(2012) Andreas Zöttl et al.   PHYSICAL REVIEW LETTERS

Hydrodynamic Synchronization and Metachronal Waves on the Surface of the Colonial AlgaVolvox carteri

(2012) Douglas R. Brumley et al.   PHYSICAL REVIEW LETTERS

Hydrodynamic Synchronization of Light Driven Microrotors

(2012) R. Di Leonardo et al.   PHYSICAL REVIEW LETTERS

Bacterial rheotaxis

(2012) Marcos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Periciliary Brush Promotes the Lung Health by Separating the Mucus Layer from Airway Epithelia

(2012) B. Button et al.   SCIENCE

Trade-Offs of Chemotactic Foraging in Turbulent Water

(2012) J. R. Taylor et al.   SCIENCE

Fluid Mechanics of Planktonic Microorganisms

(2011) Jeffrey S. Guasto et al.   Annual Review of Fluid Mechanics

Shear Stress Increases the Residence Time of Adhesion of Pseudomonas aeruginosa

(2011) Sigolene Lecuyer et al.   BIOPHYSICAL JOURNAL

Secondary Flow as a Mechanism for the Formation of Biofilm Streamers

(2011) Roberto Rusconi et al.   BIOPHYSICAL JOURNAL

Propulsive Forces on the Flagellum during Locomotion of Chlamydomonas reinhardtii

(2011) P.V. Bayly et al.   BIOPHYSICAL JOURNAL

The Orientation of Swimming Biflagellates in Shear Flows

(2011) Stephen O’Malley et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Metachronal waves in a chain of rowers with hydrodynamic interactions

(2011) C. Wollin et al.   EUROPEAN PHYSICAL JOURNAL E

Synchronization of flexible sheets

(2011) GWYNN J. ELFRING et al.   JOURNAL OF FLUID MECHANICS

Brownian dynamics of a self-propelled particle in shear flow

(2011) Borge ten Hagen et al.   PHYSICAL REVIEW E

Energetics of synchronized states in three-dimensional beating flagella

(2011) Clément Mettot et al.   PHYSICAL REVIEW E

Comparative Hydrodynamics of Bacterial Polymorphism

(2011) Saverio E. Spagnolie et al.   PHYSICAL REVIEW LETTERS

Generic Conditions for Hydrodynamic Synchronization

(2011) Nariya Uchida et al.   PHYSICAL REVIEW LETTERS

Emergence of Synchronized Beating during the Regrowth of Eukaryotic Flagella

(2011) Raymond E. Goldstein et al.   PHYSICAL REVIEW LETTERS

Reduced Transport of Swimming Particles in Chaotic Flow due to Hydrodynamic Trapping

(2011) Nidhi Khurana et al.   PHYSICAL REVIEW LETTERS

Passive hydrodynamic synchronization of two-dimensional swimming cells

(2011) Gwynn J. Elfring et al.   PHYSICS OF FLUIDS

Bacterial flagellum as a propeller and as a rudder for efficient chemotaxis

(2011) L. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Finding the ciliary beating pattern with optimal efficiency

(2011) N. Osterman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrodynamic synchronization at low Reynolds number

(2011) Ramin Golestanian et al.   Soft Matter

Microrobots for Minimally Invasive Medicine

(2010) Bradley J. Nelson et al.   Annual Review of Biomedical Engineering

High-precision tracking of sperm swimming fine structure provides strong test of resistive force theory

(2010) B. M. Friedrich et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Minimal model for synchronization induced by hydrodynamic interactions

(2010) Bian Qian et al.   PHYSICAL REVIEW E

Run-and-Tumble Particles with Hydrodynamics: Sedimentation, Trapping, and Upstream Swimming

(2010) R. W. Nash et al.   PHYSICAL REVIEW LETTERS

Oscillatory Flows Induced by Microorganisms Swimming in Two Dimensions

(2010) Jeffrey S. Guasto et al.   PHYSICAL REVIEW LETTERS

Effective Viscosity of Microswimmer Suspensions

(2010) Salima Rafaï et al.   PHYSICAL REVIEW LETTERS

Direct Measurement of the Flow Field around Swimming Microorganisms

(2010) Knut Drescher et al.   PHYSICAL REVIEW LETTERS

Efficiency optimization and symmetry-breaking in a model of ciliary locomotion

(2010) Sébastien Michelin et al.   PHYSICS OF FLUIDS

Hydrodynamic synchronization of colloidal oscillators

(2010) Jurij Kotar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Run and Tumble Chemotaxis in a Shear Flow: The Effect of Temporal Comparisons, Persistence, Rotational Diffusion, and Cell Shape

(2009) J. T. Locsei et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Walking the walk: how kinesin and dynein coordinate their steps

(2009) Arne Gennerich et al.   CURRENT OPINION IN CELL BIOLOGY

A study of synchronisation between the flagella of bull spermatozoa, with related observations

(2009) D. M. Woolley et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

DancingVolvox: Hydrodynamic Bound States of Swimming Algae

(2009) Knut Drescher et al.   PHYSICAL REVIEW LETTERS

Noise and Synchronization in Pairs of Beating Eukaryotic Flagella

(2009) Raymond E. Goldstein et al.   PHYSICAL REVIEW LETTERS

The hydrodynamics of swimming microorganisms

(2009) Eric Lauga et al.   REPORTS ON PROGRESS IN PHYSICS

ChlamydomonasSwims with Two “Gears” in a Eukaryotic Version of Run-and-Tumble Locomotion

(2009) Marco Polin et al.   SCIENCE

Disruption of Vertical Motility by Shear Triggers Formation of Thin Phytoplankton Layers

(2009) W. M. Durham et al.   SCIENCE

Biophysics of Catch Bonds

(2008) Wendy E. Thomas et al.   Annual Review of Biophysics

An Integrative Computational Model of Multiciliary Beating

(2008) Xingzhou Yang et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Synchronization, phase locking, and metachronal wave formation in ciliary chains

(2008) Thomas Niedermayer et al.   CHAOS

Hydrodynamics of ciliary propulsion

(2008) A. Dauptain et al.   JOURNAL OF FLUIDS AND STRUCTURES

Cooperation of sperm in two dimensions: Synchronization, attraction, and aggregation through hydrodynamic interactions

(2008) Yingzi Yang et al.   PHYSICAL REVIEW E