Evaluating the effect of annotation size on measures of semantic similarity

Improving chemical entity recognition through h-index based semantic similarity

(2015) Andre Lamurias et al.   Journal of Cheminformatics

Discovering novel protein–protein interactions by measuring the protein semantic similarity from the biomedical literature

(2014) Jung-Hsien Chiang et al.   Journal of Bioinformatics and Computational Biology

The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies

(2013) S. Harispe et al.   BIOINFORMATICS

Exploiting disjointness axioms to improve semantic similarity measures

(2013) João D. Ferreira et al.   BIOINFORMATICS

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

(2013) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

An integrative, translational approach to understanding rare and orphan genetically based diseases

(2013) R. Hoehndorf et al.   Interface Focus

Disease model curation improvements at Mouse Genome Informatics

(2012) S. M. Bello et al.   Database-The Journal of Biological Databases and Curation

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

(2012) Jesse Gillis et al.   PLoS Computational Biology

Exact score distribution computation for ontological similarity searches

(2011) Marcel H Schulz et al.   BMC BIOINFORMATICS

PhenomeNET: a whole-phenome approach to disease gene discovery

(2011) R. Hoehndorf et al.   NUCLEIC ACIDS RESEARCH

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

(2010) Andreas Schlicker et al.   BIOINFORMATICS

Relations as patterns: bridging the gap between OBO and OWL

(2010) Robert Hoehndorf et al.   BMC BIOINFORMATICS

An ontology-based measure to compute semantic similarity in biomedicine

(2010) Montserrat Batet et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Semantic Similarity for Automatic Classification of Chemical Compounds

(2010) João D. Ferreira et al.   PLoS Computational Biology

Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies

(2009) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Evaluation of time profile reconstruction from complex two-color microarray designs

(2008) Ana C Fierro et al.   BMC BIOINFORMATICS

Metrics for GO based protein semantic similarity: a systematic evaluation

(2008) Catia Pesquita et al.   BMC BIOINFORMATICS